CX047169

Overview
NameCX047169
Unique NameCX047169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:88..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047169 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.911e-31
Identity = 78/166 (46.99%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  149 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 646
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of CX047169 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  263 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY-PVQSEAKASDT 649
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA+ A  T T        N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAA-AKATET-------INLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of CX047169 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  278 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASDTKAQTPA 667
            LTIFYGG+V VFD   A+K +E++ +A   +  + T    + + N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS +K   PA
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS-SKPTNPA 244          
BLAST of CX047169 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.183e-11
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  272 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEA 634
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D+ N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of CX047169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH3.911e-3146.99Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH2.547e-1443.08Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH5.674e-1439.39Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH1.183e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12E10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E10-I19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047169 ID=CX047169; Name=CX047169; organism=Citrus sinensis; type=EST; length=920bp
TTAAAAAAATTGAAAAAAATCGAAGAAGAAGAGGAAGGAGTCTGGAAATT
TCTCGAGTTTAATTCAAATGGAGGAATTTGGGACTGTTGATGAAGTGAAG
CCGAAGGCTGAGGCCGGAATGGAAGTAGACGATAAGAAGAAGCATGAGGT
TGCGCAAAACGACGCCGGATCTGCTGCAGGGCTTGATTTGTCGGGGAACG
AGGTGTTTAACAACACCATCAGGGCCACGGCAATCCCAACTTCTGGAGTG
AATGCCACGGACCTTGCTCCAACTCAGCTTACGATCTTCTATGGTGGAAA
AGTGTGTGTATTTGATGCCATTCCGGCAGACAAGGTTCGTGAAATTATGC
TTATTGCTGCCTCTTCTGCCACTGTTACTAACACAAGTGACATGAAGAAG
GACGATACCAACTGTCCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTC
ACTGCAAAGCACTGCAAGTGCTTTGGCATCACCTCGGGCACAATCATATC
CTGTTCAAAGGAATCTCCTCTGCAAATTGCAAGCTGAACTACCAATGGCA
AGGAGGCATTCCCTTCAGCGATTTTTCGAGAAGCGACGTGACAGGCTGGT
GAGCAAGAATCCATATCCTGTTCAATCAGAGGCAAAAGCTTCTGACACCA
AAGCTCAGACTCCTGCAGAGGCAGGTTGCTTTGAGAAAACTTCCGTGCCT
CAGGAAGAATTGCAACCTAAGGCTGCAGCCAATGTTGCATAAATTATCTA
TCATGCTTAGATGTTTGTAGTAAATAATCCAGAACTATCTACTTAGATAA
ACTAGACATTGCTGTATTGTTTGTGTGAAAAACCCAAGCGCACAGGGTGT
GATGATGTTTGCATTGCTTTTTGGATTTGTAGGAATGGCGTGTGTACAAC
TTCTCATTGTCAGGGACCAA
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