CX047168

Overview
NameCX047168
Unique NameCX047168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:388..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047168 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  492 VCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 836
            V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   66 VTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172
The following BLAST results are available for this feature:
BLAST of CX047168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH1.172e-2351.30Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12E10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E10-I19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047168 ID=CX047168; Name=CX047168; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTAGACAGCAAATAAGATACAATAGGTTTTCATTTATTAGGC
AGTTCAGATACACAAGATATCAATACAACAATTAGACGCACAGTTTGAAC
AGACATTTCAATTGTCTTTGGATGTGAGAAGCAAAAATGTGAACTAATTC
TCTATTGCCAATTAAAAGATGCAATCACAGGGCGAAAGCACCTACATCAA
GAAATTTTTCTTTTCTTTTGGTCCCTGACAATGAGAAGTTGTACACACGC
CATTCCTACAAATTCCAAAAGCAATGCAAACATCATCACACCCTGTGCGC
TTGGGTTTTTCACACAAACAATACAGCAATGTCTAGTTTATCTAAGTAGA
TAGTTCTGGATTATTTACTACAAACATCTAAGCATGATAGATAATTTATG
CAACATTGGCTGCAGCCTTAGGTTGCAATTCTTCCTGAGGCACGGAAGTT
TTCTCAAAGCAACCTGCCTCTGCAGGAGTCTGAGCTTTGGTGTCAGAAGC
TTTTGCCTCTGATTGAACAGGATATGGATTCTTGCTCACCAGCCTGTCAC
GTCGCTTCTCGAAAAATCGCTGAAGGGAATGCCTCCTTGCCATTGGTAGT
TCAGCTTGCAATTTGCAGAGGAGATTCCTTTGAACAGGATATGATTGTGC
CCGAGGTGATGCCAAAGCACTTGCAGTGCTTTGCAGTGAAGGAGACCTTG
TTAGAACTGGTGAAGAGGCAGGACAGTTGGTATCGTCCTTCTTCATGTCA
CTTGTGTTAGTAACAGTGGCAGAAGAGGCAGCAATAAGCATAATTTCACG
AACCTTGTCTGCCGGAATGGCATCAAATACACACACT
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