CX047164

Overview
NameCX047164
Unique NameCX047164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6146 contig Csv1_Contig6146:42..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.527e-43
Identity = 89/117 (76.07%), Postives = 89/117 (76.07%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVLWDEN FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS                          V AAVRPLPALKENVKRVMFYC
Sbjct:  935 IQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS---GSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC 1048
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.100e-41
Identity = 86/117 (73.50%), Postives = 88/117 (75.21%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVLWDENKFTADGLQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP+TSDS                          V  AVRPLP LKENVKRVMFYC
Sbjct:  968 IQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNV--AVRPLPDLKENVKRVMFYC 1082
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 86/117 (73.50%), Postives = 87/117 (74.36%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVLWDENKFTAD LQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS                             AVRPLPALKENVKRVMFYC
Sbjct: 1005 IQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAG---NVAVRPLPALKENVKRVMFYC 1118
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.505e-39
Identity = 82/117 (70.09%), Postives = 87/117 (74.36%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            I+GTSRPAHYHVLWDEN FTAD LQ LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP+TSDS                           GAAV+PLPALK++VKRVMFYC
Sbjct:  897 IKGTSRPAHYHVLWDENNFTADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSSSVVSGPGVRGPLSGSSTSRTRAPG--GAAVKPLPALKDSVKRVMFYC 1011
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.322e-38
Identity = 79/117 (67.52%), Postives = 82/117 (70.09%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVLWDEN FTADG+QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY+EPE                                  V+PLPALKENVKRVMFYC
Sbjct:  884 IQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVG------------DVGVKPLPALKENVKRVMFYC 988
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.257e-38
Identity = 79/117 (67.52%), Postives = 85/117 (72.65%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            I+GTSRPAHYHVLWDEN FTAD LQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME ++SDS                           G AVRPLPALK++VK VMFYC
Sbjct:  928 IKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAG------GGAVRPLPALKDSVKNVMFYC 1038
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.078e-37
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEPE S++                           G +V+PLPA+KE VKRVMFYC
Sbjct:  879 IQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSSTGTN----------------GTSVKPLPAVKEKVKRVMFYC 979
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 75/117 (64.10%), Postives = 80/117 (68.38%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRPAHYHVL DEN FTAD LQ LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRAR+YME E SD                          GVG  +  LPA+K+NVK VMFYC
Sbjct:  896 IQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDG---------------GSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.689e-33
Identity = 72/117 (61.54%), Postives = 79/117 (67.52%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRP HYHVL+DEN FTAD LQSLTNNLCYTYARCTR+VS+VPPAYYAHLAAFRAR+Y+E E+SD                               VR LP +KENVK VMFYC
Sbjct:  954 IQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGP------------VEVRQLPKIKENVKDVMFYC 1058
[Close]
BLAST of CX047164 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.277e-30
Identity = 70/117 (59.83%), Postives = 75/117 (64.10%), Query Frame = -2 
Query:  478 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXGVGAAVRPLPALKENVKRVMFYC 828
            IQGTSRP HYHVL DEN+F+AD LQ LT NLCYTYARCTRSVS+VPPAYYAHLAAFRAR+Y EP   D                              AVR LP +KENVK VMFYC
Sbjct:  947 IQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQP-----------PAVRRLPQIKENVKDVMFYC 1052
The following BLAST results are available for this feature:
BLAST of CX047164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AGO1_ARATH6.527e-4376.07Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1A_ORYSJ2.100e-4173.50Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ3.582e-4173.50Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ1.505e-3970.09Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH6.322e-3867.52Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1D_ORYSJ8.257e-3867.52Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ1.078e-3765.81Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH1.234e-3364.10Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
MEL1_ORYSJ4.689e-3361.54Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGO14_ORYSJ1.277e-3059.83Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E08-I15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047164 ID=CX047164; Name=CX047164; organism=Citrus sinensis; type=EST; length=829bp
TTTTAATTTTAACATTAATATAAAATAATATTATTTCATTAAATTATAAC
TTAGTACAATATACCTTAATGCAATACAATTAACAGTGTAATGCAATAGT
GTAAAAGCACAAAGAGAACGTTCATATCAATAATCAGATGTTTGATGGAA
TACGGGAATCCCAACAAACACCATTGTAGAAGCATGCTCCTTTAATTTTA
CAACAAAAGTTAACCATGATCAGCCCCATGGATCCAAGCCTTCCATTCAT
CTTTTGATTGCAACCTGTTTAGTAAGGTCCAGTCCAAGCAGCACGGCACA
AAATTCAGGTCACAATTGCACAATTAAAATATCACTGGCATCCATTACAG
ACAAGTATCGCATGCAATACACTGGAAGGCAAACCATCTATGGAGTTCTC
AAAATAGATCTAAATCTTGACATCCTTGGCTCATCAGGGCAAATGTCGAA
TTCTTATCTCATGGAAAGGCAACCCTAACAGTAAAACATAACCCGCTTGA
CATTCTCCTTCAGGGCAGGAAGGGGTCTGACAGCAGCACCAACTCCAGGT
CCACGTGTGCTCCTTGCACCGACCCCTCCACCCATGCCTCCACGTCCAAT
AGTTCCACTGGTCATTGAACCACTGTCTGATGTCTCTGGCTCCATATAGA
AACGAGCTCGGAATGCTGCAAGGTGGGCATAGTATGCTGGGGGAACAATG
GAAACAGAACGAGTGCACCTAGCATATGTGTAGCAGAGGTTGTTTGTGAG
GGACTGTAGTCCATCAGCTGTAAACTTGTTCTCATCCCATAGAACATGGT
AATGGGCAGGACGGCTTGTACCCTGTATT
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