CX047161

Overview
NameCX047161
Unique NameCX047161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2831 contig Csv1_Contig2831:369..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047161 vs. ExPASy Swiss-Prot
Match: BZI60_ARATH (bZIP transcription factor 60 OS=Arabidopsis thaliana GN=BZIP60 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = -2 
Query:  399 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS-LTKQESAVLLL 641
            ++KKRRR++RNRDAAVRSRERKK YV+DLE KS+YLE EC +LGR+L C +AENQSLR+ LQKGN    + ++KQESAVLLL
Sbjct:  140 VAKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLERECLRLGRMLECFVAENQSLRYCLQKGNGNNTTMMSKQESAVLLL 221
The following BLAST results are available for this feature:
BLAST of CX047161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BZI60_ARATH1.203e-2469.51bZIP transcription factor 60 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12E06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E06-I11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047161 ID=CX047161; Name=CX047161; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTTCCCAAGAAAAATTCGGCCAACAGATTTTATAAACATGTACA
GCAACAGTTACAAAGTTCTTCAACCAAACTTCAGAACAAAGAAAGATTGA
TGTGCGACCAAGAACAACAAGTTGATTTTGTCAGTTGAGAAAATCGTGAG
GATGCTAAATCTTTGATTACATGAAGAACAGCATATCTGTACACGCGTGG
ACATGATTGCATTTGAATAACAAGATAAAGCTTCAGCCATATACAAGCCA
GTTAAATTTTGAAACTACCAAAATTAAGAGCATTGAAGACAATGCCACAC
TGATACTGTATTAATGGTGAATTCAACTCCACAATAATAAATAACTCCAC
ATTCCAAGAGCCAAGAATATGAGGGAAAGATAATTCATGAATCATACCCA
ACAAGAGCACAGCAGACTCCTGCTTGGTCAAGGATGCACCATATGCATTG
CCCTTTTGCAAACTAAATCTAAGGGATTGATTTTCTGCAAGAACACAGTG
AAGCAACCGCCCGAGTTTCCTGCATTCACTTTCCAAGTACCTGCTCTTCA
TCTCCAGATCCTTCACATACATCTTCTTCCTCTCCCTCGATCTGACTGCT
GCATCCCTATTTCTCAACTGCCTTCTCCGTTTCTTGGAGATGGGATCATC
AGCATTATCGTTGTCAGTGTCGTTATAGTTTTTGTCGCTGTTGTTGACCT
CTGGTTCATCGAGCACGTTCTCCTCAGCCGGGCTAGCGTTACCAGATTCA
TCGGCACCGTTTTGGCCT
back to top