CX047160

Overview
NameCX047160
Unique NameCX047160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2831 contig Csv1_Contig2831:372..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047160 vs. ExPASy Swiss-Prot
Match: BZI60_ARATH (bZIP transcription factor 60 OS=Arabidopsis thaliana GN=BZIP60 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.194e-24
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 2 
Query:  125 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS-LTKQESAVLLL 367
            ++KKRRR++RNRDAAVRSRERKK YV+DLE KS+YLE EC +LGR+L C +AENQSLR+ LQKGN    + ++KQESAVLLL
Sbjct:  140 VAKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLERECLRLGRMLECFVAENQSLRYCLQKGNGNNTTMMSKQESAVLLL 221
The following BLAST results are available for this feature:
BLAST of CX047160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BZI60_ARATH1.194e-2469.51bZIP transcription factor 60 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12E06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E06-I11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047160 ID=CX047160; Name=CX047160; organism=Citrus sinensis; type=EST; length=764bp
CCAAAACGGTGCCGATGAATCTGGTAACGCTAGCCCGGCTGAGGAGAACG
TGCTCGATGAACCAGAGGTCAACAACAGCGACAAAAACTATAACGACACT
GACAACGATAATGCTGATGATCCCATCTCCAAGAAACGGAGAAGGCAGTT
GAGAAATAGGGATGCAGCAGTCAGATCGAGGGAGAGGAAGAAGATGTATG
TGAAGGATCTGGAGATGAAGAGCAGGTACTTGGAAAGTGAATGCAGGAAA
CTCGGGCGGTTGCTTCACTGTGTTCTTGCAGAAAATCAATCCCTTAGATT
TAGTTTGCAAAAGGGCAATGCATATGGTGCATCCTTGACCAAGCAGGAGT
CTGCTGTGCTCTTGTTGGGTATGATTCATGAATTATCTTTCCCTCATATT
CTTGGCTCTTGGAATGTGGAGTTATTTATTATTGTGGAGTTGAATTCACC
ATTAATACAGTATCAGTGTGGCATTGTCTTCAATGCTCTTAATTTTGGTA
GTTTCAAAATTTAACTGGCTTGTATATGGCTGAAGCTTTATCTTGTTATT
CAAATGCAATCATGTCCACGCGTGTACAGATATGCTGTTCTTCATGTAAT
CAAAGATTTAGCATCCTCACGATTTTCTCAACTGACAAAATCAACTTGTT
GTTCTTGGTCGCACATCAATCTTTCTTTGTTCTGAAGTTTGGTTGAAGAA
CTTTGTAACTGTTGCTGTACATGTTTATAAAATCTGTTGGCCGAATTTTT
CTTGGGAAAAAAAA
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