CX047156

Overview
NameCX047156
Unique NameCX047156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.565e-60
Identity = 117/132 (88.64%), Postives = 124/132 (93.94%), Query Frame = -1
Query:  189 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 584
            FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLKRE AA
Sbjct:    3 FKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.908e-59
Identity = 116/132 (87.88%), Postives = 124/132 (93.94%), Query Frame = -1
Query:  189 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 584
            FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLK+E  A
Sbjct:    3 FKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.152e-54
Identity = 105/132 (79.55%), Postives = 118/132 (89.39%), Query Frame = -1
Query:  192 PFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENA 587
            PFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLK+  A
Sbjct:    2 PFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 60/130 (46.15%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+RYVE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    3 FRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 59/130 (45.38%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+R+VE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    3 FRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 61/130 (46.92%), Postives = 83/130 (63.85%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+R+VEIGRVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK ++  KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL++
Sbjct:    3 FRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = -1
Query:  204 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 584
            F R+VE GRVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V   +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    3 FTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 1.803e-25
Identity = 57/130 (43.85%), Postives = 86/130 (66.15%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 57/130 (43.85%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CX047156 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25
Identity = 57/130 (43.85%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  201 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 584
            F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CX047156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL141_ARATH8.565e-6088.6460S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH1.908e-5987.8860S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA3.152e-5479.55Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE1.248e-2646.1560S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT3.632e-2645.3860S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU6.195e-2646.9260S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_GRIJA1.057e-2550.0060S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_HUMAN1.803e-2543.8560S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG5.245e-2543.8560S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN6.850e-2543.8560S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12E02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E02-I3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047156 ID=CX047156; Name=CX047156; organism=Citrus sinensis; type=EST; length=755bp
GAACAACAAAGCTTGAGATCAGATTATAACAGAAAGGACATTACGAAAAT
ATCTAAAAATTCTGTCCAAATAACAATTAACCCAAAAACGCCAAGCTGAT
GTTTTCTCATATTAATCAATACATTAATAGAATCAAATTGAAGCTGTAAG
AACTAAAAACCAGAAAGGGGAACACGAGAGAAATTCTATGCTGCATTCTC
CCTCTTGAGTTTTGCAAGCTCCTGTCGAACAAGTCCACCCTTCTTGATCT
TGGCCAACATGAGCTTGAACCTATCAAAATCATTCAGTGCCGCTCTCCTT
TTCTGGACAATCAGCTTCCTGCCCCAGGAGCTGTTTTCCCATTTGTTCTT
CACATCAGCCTTCTCCATGGCTTCAATCAAAGACTTCTTCCTGGGAACTC
GATTGATGTCAATCTTAATATCCGTGAGAGAAAGCCTCTTGAAGTTCATT
TGGCTCCTCACCATATCAGGGGCATCAACAAGAGCCCTGTTTTGATCAAG
GACATCGACGATGACCACAAGCTTCCCATAGTCCTTCCCGTAATTAACGA
GAGCAACTCTTCCTATCTCCACGTACCTCTTGAACGGCTACACTCAAGGT
CATAAACTTTCAATTATCAACTACTTGTTGAAAAAAAAAAAAAAAACTAC
GAGAGATTCAAGTTAATTAATCACTGTGTTGGTTAATTCGTGATCTGAGA
AGGACCCATTAGTGGCGAAGTGGTTACCATTTTCGAAGATATTCAAGGCT
CTGCC
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