CX047155

Overview
NameCX047155
Unique NameCX047155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10643 contig Csv1_Contig10643:844..1241. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ELCN  E  NEV + LS+ A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  647 ELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ELCN  E  NEV + LS+ A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  647 ELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.051e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ELCN +E  NEV + LS+ A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  647 ELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.051e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ELCN +E  NEV + LS+ A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK  ++ D++ +Y
Sbjct:  647 ELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ++CN      E+ + + + A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK  +  D++ +Y
Sbjct:  597 DICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ++CN      E+ + + + A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK  +  D++ +Y
Sbjct:  638 DICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708
[Close]
BLAST of CX047155 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.151e-14
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = -2 
Query:  179 ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKGKFKDDLQMLY 391
            ++CN      E+ + + + A A KL++FEIP K++L PEPWTPE GLVT A K+KR++L+  +  D++ +Y
Sbjct:  638 DICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708
The following BLAST results are available for this feature:
BLAST of CX047155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACSL3_PONAB1.818e-1756.34Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN1.818e-1756.34Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_RAT4.051e-1754.93Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL3_MOUSE4.051e-1754.93Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]
ACSL4_RAT3.210e-1445.07Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE4.192e-1445.07Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL4_HUMAN7.151e-1443.66Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12E01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E01-I1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047155 ID=CX047155; Name=CX047155; organism=Citrus sinensis; type=EST; length=398bp
TTTTTTTTTTTTTTTTTCCACCCCCCAAACATCAAACTTGAATTTCAAGT
AAAAAGATAGGCACCAATTTGTTAAAAAATCACATTCTACAAAAAAAAAA
ATCACAAACTTAAAAAGTAGCAACTTGTAAATATGTGCCATAACTAGGCA
ACAAAAAAAAATGCACCATTTATTACTGATACAACATTTGGAGATCATCC
TTAAACTTACCCTTGAGTTGTTCCCTCTTTATCTTCAAAGCAGCAGTAAC
CAATCCAGCCTCGGGGGTCCAGGGTTCTGGCATCAACTTAATCTTTGCAG
GAATCTCAAACTTGTCGAGTTTTGCAGCTTTTGCTACCTTGGAAAGAGCT
TGTTGAACCTCATTGACAGCCTCAGCTTTGTTACACAACTCTGCCTCG
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