CX047152

Overview
NameCX047152
Unique NameCX047152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.547e-50
Identity = 93/160 (58.13%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  358 VLARYRKTLMERTKHHLGYPYNLDFDYGA-LAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            +L +Y +TL ER K+H+GYP N+ +++ A LA L  F +NN GDPF +     HS+ FEV VLDWFA+LWE+E +EYWGYIT+ GTEGNLHG  +G RE+ P+G LYAS++SHYS+FKAARMYRME   ++ L++GEID    ++KLL NK+KPAIIN+N
Sbjct:   17 ILTQYLETLSERKKYHIGYPINMCYEHHATLAPLLQFHLNNCGDPFTQHPTDFHSKDFEVAVLDWFAQLWEIEKDEYWGYITSGGTEGNLHGFWLGRRELLPNGYLYASKDSHYSIFKAARMYRMELQTINTLVNGEIDYEDLQSKLLVNKNKPAIININ 176          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.207e-29
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP N DF+Y  L +   FSINN GD     NY ++S  FE  V+ +FA L+ +   E WGY+TN GTEGN+ G  + RE+FP G LY S+++HYSV K  ++ R++C  V+ L +GEID     AK+  ++++  II VN
Sbjct:   25 NIGYPENADFNYAQLHRFLRFSINNCGDWAEPGNYLLNSFDFEKDVMAYFAELFSIPLEESWGYVTNGGTEGNMFGCYLARELFPTGTLYYSKDTHYSVAKIVKLLRIDCRAVESLPNGEIDYDDLMAKIAADQEQHPIIFVN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.051e-28
Identity = 64/144 (44.44%), Postives = 93/144 (64.58%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNL-GDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY  L +   FSINNL G     SNY ++S  FE  V+ +FA L+ +   + WGY+TN GTEGN+ G  +GRE+FPDG LY S+++HYSV K  ++ R++C  V+ L +GEID     AK+  ++++  II  N
Sbjct:   25 NIGYPESADFDYSQLHRFLQFSINNLLGTGNEYSNYLLNSFDFEKDVMTYFAELFNIALEDSWGYVTNGGTEGNMFGCYLGRELFPDGTLYYSKDTHYSVAKIVKLLRIKCRAVESLPNGEIDYDDLMAKITADQERHPIIFAN 168          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBT (Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.051e-28
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+ G  + RE+FPD  LY S+++HYSV K A++ +M+   ++ L +GEID      K+  NK+   II  N
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFPDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGEIDYDDLIHKIKTNKESHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.051e-28
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+ G  + RE+FPD  LY S+++HYSV K A++ +M+   ++ L +GEID      K+  NK+   II  N
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFPDSTLYYSKDTHYSVRKIAKLLQMKSCVIESLDNGEIDYDDLIHKIKTNKESHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.569e-28
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  379 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++ E     LGYP+  DFDY  L +    + NNLGDPF    Y V+S  FE  V+D+FARL+   + E WGY+TN GTEGN++G+ + RE++P+ + Y S+++HYSV K  R+ R+E   V    +GEI+      K  + + +PA++  N
Sbjct:   16 SMQEANGCFLGYPFAKDFDYEPLWRFMSLTGNNLGDPFEPGTYRVNSHAFECDVVDFFARLFRACSCEVWGYVTNGGTEGNIYGLYLARELYPNAVAYFSQDTHYSVSKGVRLLRLEHSVVRSQSNGEINYDDLAQKATRYRTRPAVVVAN 166          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 4.569e-28
Identity = 61/143 (42.66%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY  L +   FSINN GD     NY ++S  FE  V+++FA+L+++   E WGY+TN GTEGN+ G  +GRE+FP+G LY S+++HYSV K  ++ R++   V+   +GE+D A    K+ ++ +K  II  N
Sbjct:   25 NIGYPESADFDYTILERFMRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFAQLFKIPFEESWGYVTNGGTEGNMFGCYLGREIFPNGTLYYSKDTHYSVAKIVKLLRIKSTLVESQPNGEMDYADLIKKIKRDNEKHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.736e-27
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+ G  + RE+F D  LY S+++HYSV K A++ +M+   ++ L +GEID      K+  NK+   II  N
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFSDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGEIDYDDLIHKIKTNKESHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB5 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB0057) GN=hdc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.736e-27
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+ G  + RE+F D  LY S+++HYSV K A++ +M+   ++ L +GEID      K+  NK+   II  N
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFSDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGEIDYDDLIHKIKTNKESHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB3 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB307-0294) GN=hdc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.736e-27
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+ G  + RE+F D  LY S+++HYSV K A++ +M+   ++ L +GEID      K+  NK+   II  N
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFSDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGEIDYDDLIHKIKTNKESHPIIFAN 167          
The following BLAST results are available for this feature:
BLAST of CX047152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_SOLLC5.547e-5058.13Histidine decarboxylase OS=Solanum lycopersicum GN... [more]
DCHS_PSEE49.207e-2944.06Histidine decarboxylase OS=Pseudomonas entomophila... [more]
DCHS_PSEFL2.051e-2844.44Histidine decarboxylase OS=Pseudomonas fluorescens... [more]
DCHS_ACIBT2.051e-2844.06Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBC2.051e-2844.06Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_RHILO4.569e-2840.40Histidine decarboxylase OS=Rhizobium loti GN=hdc P... [more]
DCHS_KLEPL4.569e-2842.66Histidine decarboxylase OS=Klebsiella planticola G... [more]
DCHS_ACIBY1.736e-2743.36Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB51.736e-2743.36Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB31.736e-2743.36Histidine decarboxylase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12D12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12D12-G23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047152 ID=CX047152; Name=CX047152; organism=Citrus sinensis; type=EST; length=833bp
CTCTCGTGTCTGATTGAACGAGTACACCGCCTCTTAGTCCACCAATCAAA
TCAAAGGACTCTCATTTCCATTCTCAGATCAAAGGATCAGTTATTTTTAG
CAAGTTATATGGCTGAAGCGATGATGAAGCAGGTGAACGGAGGGTTGGCC
GAGAAATTTGGTCCGGTCTTCGATCCAACGGCCGTGGTGGCGGAACCGGT
GCCTCCGGTGGTGACGGAAAACGGCCATGAGCTGAAGCATAAGACCGCCG
AGAAAGAGATTGTGCTTGGGAAGAACGTACACGCGTCGTGCTTCTCTGTC
ACGGAACCCGAGGCAGACGACGAGTTCACTGGCGACAAGGAGGCTTACAT
GGCTGGGGTCTTGGCTCGATATAGGAAGACCTTAATGGAACGGACCAAAC
ACCATTTAGGTTATCCTTATAATCTGGACTTCGATTATGGTGCTCTTGCT
CAGTTGCAGCATTTCTCCATCAATAATCTTGGGGATCCATTTATTGAGAG
CAACTATGGTGTTCATTCAAGACAGTTTGAAGTTGGTGTTTTGGATTGGT
TTGCCCGTCTTTGGGAACTAGAGAATAATGAGTACTGGGGATACATTACA
AACTGTGGTACAGAAGGCAACCTTCATGGAATATTAGTTGGGAGAGAGGT
GTTTCCTGATGGAATTCTTTATGCATCACGAGAATCGCATTATTCTGTCT
TTAAAGCAGCACGTATGTATCGAATGGAATGTGTGAAGGTTGACTGTTTG
ATCTCCGGTGAAATTGATTGTGCTGGTTTTAAAGCTAAATTACTCCAGAA
CAAGGACAAGCCAGCTATCATTAATGTTAATAT
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