CX047149

Overview
NameCX047149
Unique NameCX047149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047149_ssr783 microsatellite CX047149_ssr783:783..792. BLAST: Citrus ESTs to Prunus persica proteins V1
CX047149_ssr105 microsatellite CX047149_ssr105:105..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.514e-49
Identity = 101/151 (66.89%), Postives = 116/151 (76.82%), Query Frame = -1
Query:  282 GRRSNVFDPFSLDIWDPFEGF---SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 725
            GRRSNVFDPFS D+WDPFEGF   SS++AN  S+AR+ +AF N R+DWKETPEAHVFKADLPGL         ED  VLQISGERS+E EEKNDKWHRVER+SGKFMRRFRLPENAKM++++A+MENGVL              K+IDISG
Sbjct:   10 GRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.674e-48
Identity = 94/151 (62.25%), Postives = 113/151 (74.83%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F  GRRSNVFDPFSLD+WDPF+ F    ++     +ET+AF NT IDWKETP+AHVFKADLPGL         E+G+VLQISGER++E+EEKNDKWHRVERSSGKF+RRFRLPENAK+D+++A+M NGV+              KAIDISG
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.856e-48
Identity = 98/152 (64.47%), Postives = 114/152 (75.00%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F  GRRSNVFDPFSLD+WDPF+ F  + + + +S  RE SAF +TR+DWKETPEAHVFKADLPG+         ED RVLQISGERS E+E+KND+WHR+ERSSGKFMRRFRLPENAKMDQ++A+MENGVL              K IDISG
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.362e-48
Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGF----SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F  GRR+NVFDPFSLD+WDPF+ F    + S A+ P  +RE SAF +TR+DWKETPEAHVFKAD+PGL         ED +VLQISGER+ E+E+KND WHRVERSSGKFMRRFRLPENAK++Q++ASMENGVL              KAI+ISG
Sbjct:    7 FFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.309e-48
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = -1
Query:  345 FDSGRRSNVFDPFSLD-IWDPFEGFSSSVANIPSS--ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 734
            F++GRRSN+FDPFSLD IWDPF G  S+++ +P S  A ET+AFAN RIDWKETPEAHVFKADLPG+         EDG VL+ISG+R+RE+EEKND WHRVERSSG+FMR+FRLPENAK+DQ++A MENGVL
Sbjct:    9 FNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.085e-47
Identity = 98/150 (65.33%), Postives = 112/150 (74.67%), Query Frame = -1
Query:  282 GRRSNVFDPFSLDIWDPFEGF--SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 725
            GRR+NVFDPFSLD++DPFEGF   S +AN P  A + +AF N ++DW+ETPEAHVFKADLPGL         EDG +LQISGERS E EEKNDKWHRVERSSGKF RRFRLPENAKM++I+ASMENGVL              K+IDISG
Sbjct:   10 GRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.418e-47
Identity = 98/152 (64.47%), Postives = 114/152 (75.00%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F SGRRSNVFDPFSLD+WDP + F  S ++  +S  RE  AF +TR+DWKETPEAHVFKADLPGL         ED RVLQISGERS E+E+KND+WHRVERSSGKF+RRFRLPENAKMD+++ASMENGVL              K+I+ISG
Sbjct:    7 FFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.124e-47
Identity = 93/152 (61.18%), Postives = 113/152 (74.34%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGF-SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F  GRR+NVFDPFSLD+WDPFEGF +  + N P  A++ +AF N ++DW+ETPEAHVFKAD+PGL         EDG +LQISGERS E EEK+D WHRVERSSGKFMRRFRLPENAK+++++ASMENGVL              K++DISG
Sbjct:    7 FFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.187e-47
Identity = 97/152 (63.82%), Postives = 112/152 (73.68%), Query Frame = -1
Query:  282 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 734
            F  GRRS+VFDPFSLD+WDPF+ F       PSS + E SAF +TR+DWKETPEAHVFKAD+PGL         +DGRVLQISGER+ E+E+KND WHRVERSSGK +RRFRLPENAK+DQ++ASMENGVL              KAIDISG
Sbjct:    7 FFGGRRSSVFDPFSLDVWDPFKDFP-----FPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CX047149 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.673e-46
Identity = 98/157 (62.42%), Postives = 113/157 (71.97%), Query Frame = -1
Query:  282 RRSNVFDPFSLDIWDPFEGF------SSSVANIPSSAR----ETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISG 722
            RRSNVFDPFSLD+WDPF+GF      SSS +  PS  R    ET+AFA  RIDWKETPEAHVFKAD+PGL         +DG +LQISGER++EQEEK D+WHRVERSSGKF+RRFRLP+NAK +QI+ASMENGVL              K+I ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
The following BLAST results are available for this feature:
BLAST of CX047149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS181_ARATH1.514e-4966.8918.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA1.674e-4862.2517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_MEDSA2.856e-4864.4718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP16_SOYBN6.362e-4862.5818.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU8.309e-4869.9218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17C_ARATH1.085e-4765.3317.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_PEA2.418e-4764.4718.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP17_ARATH4.124e-4761.1817.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOYBN9.187e-4763.8217.3 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ2.673e-4662.4217.9 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12D09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12D09-G17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047149 ID=CX047149; Name=CX047149; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTTTATAAGCTTAATTTACAACAAACATTTTATAACT
TCATGTATAATACACATGAGATCACATCACAAAAGTACAACCAGAAACAC
AAAAACAAGACAAGACAAGTAGACAACACTACACTACAATCTTATTTACT
ATTATTAATATTATTATTCAGACAGAAGAGAAAACTGATCAAAAGGCCAA
AAAGCCATGTGCATGGATGTATATGTAGATGATATATCATTTTGTATAAT
AACTTGCTTCTCGGCCTCGGGCTCAACCTCAGCCAGAAATGTCAATAGCC
TTAACCTCAGGCTTCTTAACATCCTCTTTAGGGACAGTGACAGTAAGCAC
ACCGTTCTCCATGCTAGCTCTGATCTGATCCATCTTGGCATTCTCAGGCA
ACCGGAACCTCCTCATGAACTTGCCACTGCTCCTCTCAACACGGTGCCAC
TTGTCGTTCTTCTCCTCCTGCTCTCTGCTCCTCTCTCCGCTTATCTGCAG
AACCCTTCCATCTTCAACCTCCACCTTCACCTCTTCCTTCTTCAGCCCCG
GAAGATCAGCCTTAAACACATGAGCTTCTGGGGTCTCTTTCCAGTCAATT
CTTGTGTTGGCAAAGGCTGATGTTTCCCTTGCTGAGGACGGAATATTAGC
GACTGACGATGAGAACCCTTCAAAGGGATCCCATATGTCCAGTGAAAACG
GATCGAACACGTTGCTCCTCCGGCCACTATCAAAAAGACTCAAAGCCATG
TCGCTGTGTTTCACTATGTTTGCTTCTGTTTCTGTGTGTGTGTACTAATG
CCT
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