CX047141

Overview
NameCX047141
Unique NameCX047141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047141 vs. ExPASy Swiss-Prot
Match: Y2433_ARATH (Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.628e-35
Identity = 80/138 (57.97%), Postives = 93/138 (67.39%), Query Frame = 3 
Query:    3 TVLASKLGADFGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGGAGSTPLHHSDEETSSSFGSE---GPEHNQLVVNHHY-PQVSTMHDGGWIARIAAILVGDDPSQSYALICGNCHMHNGESVRKDIP 404
            TVLASKLGA+ GL VFVGDES      G +N      S GLRNRKQ   R   A +TP+HHSD E++ S  SE   G E NQ +V  HY PQ    HDG WI+RIAA+LVG+DPSQSYALICGNC MHNG + ++D P
Sbjct:  195 TVLASKLGAESGLKVFVGDESQLEPTAGKNN---AKHSGGLRNRKQTNTRGNSAETTPIHHSDNESNHSGTSERITGTEQNQQMVFEHYNPQEYAAHDGSWISRIAALLVGEDPSQSYALICGNCRMHNGLARKEDFP 329
The following BLAST results are available for this feature:
BLAST of CX047141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2433_ARATH2.628e-3557.97Uncharacterized protein At2g24330 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12D04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12D04-G7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047141 ID=CX047141; Name=CX047141; organism=Citrus sinensis; type=EST; length=918bp
CAACAGTCCTGGCATCCAAGCTAGGCGCAGATTTTGGTTTGAATGTGTTT
GTGGGGGATGAATCTAATTTCAATGTTCCACTGGGGAATAGCAATGATGT
CGAGGTTATGCCATCTAGCGGTCTTCGAAATCGAAAGCAATTGCAGCCCA
GATCTGGTGGTGCTGGTAGCACTCCATTGCATCATTCTGATGAAGAAACC
TCTAGTTCCTTTGGGAGCGAGGGTCCTGAGCATAATCAACTTGTTGTGAA
TCATCACTATCCCCAGGTGTCTACCATGCATGACGGAGGATGGATTGCTC
GAATTGCAGCAATACTTGTTGGAGACGATCCTTCACAATCTTATGCTCTT
ATATGTGGCAACTGCCATATGCATAATGGTGAGTCTGTTAGAAAGGATAT
TCCTACCCTCTTACTGCTTAACGATGAAATCACATGCACGACCCCAAAAT
CAATTGTGTTGTTTATGAAATGATCGGGATTGAAGAAAACTATTTTTTCT
TTTGTTGTATGTGCGAAGGTCTTGCTAGGAAGGAGGATTTCCCATATATT
ACATATTACTGTCCACACTGCAATGCCCTGAATAGGCCTAAAGAATCAGA
AGGGCACATTTCTGGTTCTATTTCTAGTTTGCCTCCGAAAGAGTTAGAAG
AGCTTGTTTCTGGTTCTATTTCTAATCCGCCTCCGAAGGTATCAGAAGAG
CATGTTGCTGGTTGTAGTTCTAGTTCACCTAATATGAGCACCTTGACAGC
AGATTCAGTCAACAATGCTACTACTAGTCCTTTGAGTGGTAGCATATGTG
GAAGTAATAGCCCTGTCAGAGAGGGTCTGGGAACTGAGGAAGCTGAAAAA
GTTGCTTCACTTGATATGGTTAGTTGAAAGGTAGACTGGTGTTGAACTAC
TTATTGCACTGAGTTTTT
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