CX047132

Overview
NameCX047132
Unique NameCX047132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_CUPLA (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.963e-67
Identity = 125/135 (92.59%), Postives = 132/135 (97.78%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            LFSTPYFMV+AV+DVEGVELCGTLKN+VAIAAGFVDGLEMGNNTKAAIMRIGLREM+AFSKLLF SVKD+TFFESCGVADLITTCLGGRNRKVAEAFAKN GKRSFDDLEAEML+GQKLQGVSTA+EVYEVL HR
Sbjct:  201 LFSTPYFMVSAVEDVEGVELCGTLKNIVAIAAGFVDGLEMGNNTKAAIMRIGLREMKAFSKLLFPSVKDTTFFESCGVADLITTCLGGRNRKVAEAFAKNGGKRSFDDLEAEMLRGQKLQGVSTAKEVYEVLGHR 335          

HSP 2 Score: 26.5646 bits (57), Expect = 1.963e-67
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -3
Query:  417 PPSAIVEYSERK 452
            PPSAIVEYSE+K
Sbjct:  356 PPSAIVEYSEQK 367          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_ARATH (Glycerol-3-phosphate dehydrogenase [NAD+], chloroplastic OS=Arabidopsis thaliana GN=DHAPRD PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.305e-64
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = -1
Query:  449 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 850
            LFSTPYFMVT V DVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM+A SKLLF SVKDSTFFESCGVAD+ITTCLGGRNR+VAEAFAK+ GKRSFD+LEAEMLQGQKLQGVSTAREVYEVL H
Sbjct:  233 LFSTPYFMVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMKALSKLLFPSVKDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEVLKH 366          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_RAT (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Rattus norvegicus GN=Gpd1 PE=1 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 8.241e-41
Identity = 85/136 (62.50%), Postives = 104/136 (76.47%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL  G+NTKAA++R+GL EM AF+KL  S SV  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L H+
Sbjct:  180 LMQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHK 313          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_BOVIN (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Bos taurus GN=GPD1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 8.241e-41
Identity = 85/136 (62.50%), Postives = 104/136 (76.47%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL  G+NTKAA++R+GL EM AF+KL  S SV  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L H+
Sbjct:  180 LMQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHK 313          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_HUMAN (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Homo sapiens GN=GPD1 PE=1 SV=4)

HSP 1 Score: 167.162 bits (422), Expect = 1.076e-40
Identity = 85/136 (62.50%), Postives = 103/136 (75.74%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL  G+NTKAA++R+GL EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE E+L GQKLQG  TARE+Y +L H+
Sbjct:  180 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGPETARELYSILQHK 313          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_MOUSE (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Mus musculus GN=Gpd1 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.836e-40
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL  G+NTKAA++R+GL EM AF+KL  S +V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L H+
Sbjct:  180 LMQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGTVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHK 313          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_PONAB (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Pongo abelii GN=GPD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.342e-40
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL  G+NTKAA++R+GL EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE E+L GQKLQG  TARE++ +L H+
Sbjct:  180 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFRSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGPETARELHSILQHK 313          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1L_DANRE (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Danio rerio GN=gpd1l PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.462e-39
Identity = 83/137 (60.58%), Postives = 101/137 (73.72%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLF--SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T V D + VELCG LKN+VA+ AGF DGL+ G+NTKAA++R+GL EM AF+KL     SV  +TF ESCGVADLITTC GGRNR+VAEAFAK    +S ++LE EML GQKLQG  T+ EVY +L  +
Sbjct:  181 LLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLQCGDNTKAAVIRLGLMEMIAFAKLFSKDDSVSSATFLESCGVADLITTCYGGRNRRVAEAFAKT--GKSIEELEKEMLNGQKLQGPLTSAEVYHILKQK 315          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1L_XENLA (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus laevis GN=gpd1l PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.316e-38
Identity = 82/136 (60.29%), Postives = 100/136 (73.53%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLF-SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +T V+D + VELCG LKN+VA+AAGF DGL  G+NTKAA++R+GL EM AF+ +    SV  +TF ESCGVADLITTC GGRNRKVAEAF K    +S ++LE EML GQKLQG  T+ EVY +L  +
Sbjct:  183 LLQTPNFRITVVEDADTVELCGALKNIVAVAAGFCDGLSCGDNTKAAVIRLGLMEMIAFANVFCKDSVSIATFLESCGVADLITTCYGGRNRKVAEAFVKT--GKSIEELEKEMLNGQKLQGPQTSAEVYRILQQK 316          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_RABIT (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Oryctolagus cuniculus GN=GPD1 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.530e-38
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            L  TP F +   Q+V  VE+CG LK++VA+ AGF DG+  G+NTKAA++R+GL EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L H+
Sbjct:  180 LMQTPNFRIVVTQEVNTVEICGALKDLVAVGAGFCDGIGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSPATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPETARELHSILQHK 313          
The following BLAST results are available for this feature:
BLAST of CX047132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
GPDA_CUPLA1.963e-6792.59Glycerol-3-phosphate dehydrogenase [NAD+] OS=Cuphe... [more]
GPDA_ARATH5.305e-6491.79Glycerol-3-phosphate dehydrogenase [NAD+], chlorop... [more]
GPDA_RAT8.241e-4162.50Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_BOVIN8.241e-4162.50Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_HUMAN1.076e-4062.50Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_MOUSE1.836e-4061.76Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_PONAB5.342e-4061.76Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPD1L_DANRE3.462e-3960.58Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPD1L_XENLA1.316e-3860.29Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPDA_RABIT6.530e-3858.82Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12C09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C09-E17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047132 ID=CX047132; Name=CX047132; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTCTAACATTTGATAAGAAGGTATTATGCACTCTGAAT
ATCAGATTCTGCGTCACATTTGGCACTCTGAACATCAAAAGAGAACACTT
TGAATATCTAAAACAATGCAAAAACAGAAGATACTAGTAGTAAAAGCTTT
TGAAGGCTAAAGGCATCTCTGAAGCTTGAAGGTTCCTGACACGCTGCATT
TTCAGTTCCTTTGATCGATCTCACTGTTACGGCAACTGATTTTGCATGAG
TTAATTAGCAGCCAGAAGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCA
CAACTTAGAAAAAGTTTACTTTCAAAACTGTACCTCAAATACGTGAAATA
TATTACTTCTATCTGTGGGAAGAGTCAGTAGTACTGAGTAGAGCCTTCCA
GTAGAGACAATCTGGGTTTGCGCTCACTGTATTCAACTATGGCTGACGGT
GGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAGACTCCCTGTAATTTC
TGGCCCTGAAGCATCTCTGCTTCTAGATCATCGAAAGACCTTTTCCCTTC
GTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCATG
TTGTGATGAGATCAGCTACACCACAGCTCTCAAAGAAGGTGCTGTCCTTA
ACAGATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAGACCAAT
TCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACGA
AACCTGCAGCGATTGCTACAACATTTTTCAAGGTCCCACATAGTTCAACT
CCTTCCACGTCTTGGACAGCAGTGACCATAAAATAAGGAGTACTAAATAG
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