CX047131

Overview
NameCX047131
Unique NameCX047131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.026e-16
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  482 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKP 898
            EY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AAL   MW R + P
Sbjct:   28 EYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAAL-VWMWTRYDLP 164          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.026e-16
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  482 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKP 898
            EY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AAL   MW R + P
Sbjct:   28 EYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAAL-VWMWTRYDLP 164          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  476 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKPKT 898
            EY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ ++ R  PLWVGARG+EF W Y+    ++N +LV  I++AA+   M+ R + PK+
Sbjct:   28 EYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELIMSRCIPLWVGARGIEFDWKYIQMSFDSNISLVHYIAMAAV-VWMFTRYDLPKS 166          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  518 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 898
            EY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:   28 EYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  518 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 898
            EY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:   28 EYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  518 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 898
            EY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:   28 EYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047131 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  518 EYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 898
            EY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:   28 EYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
The following BLAST results are available for this feature:
BLAST of CX047131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_XENTR2.026e-1634.75Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA2.026e-1634.75Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE1.313e-1533.57Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
TM147_RAT2.925e-1534.65Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE2.925e-1534.65Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN2.925e-1534.65Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN2.925e-1534.65Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047131 ID=CX047131; Name=CX047131; organism=Citrus sinensis; type=EST; length=899bp
TTTAACAGAAAGAAACCAACCAATTACTTAAACACGAGTACGTGCATGGA
ACGGGAGAGTTGTATCAAATAGCATCTTATTACATAAATATTATTCAAAG
TTTTACTTTTTCTCAATTTGGAGTTGAATGCGTGTGTAGGTGGCTTCAAT
GAACACCCGCAAACAGTATGTGATAAGGTTCCATAAGGAGAATATGCTCA
TAGGAACAGGCCCTCTTTAAGAGAATTATGCTGTTGCAAAAAAACTGCCT
CAACCAACTGTCCAGAAGTAATGCTTGGCTTCCTCAGGCTGTCAGGCAGA
AGGTCTCTGACACGCAGAGAAGAGTTGCCAACTAATGAATGCCATCACCA
ACGAAGTAAAAAGTTCAAAGCCTACCACCTTTGGAAATTTGCCATCCCAA
TCCCCGCCTCAAATAGCTTGTAATAGATGGCATGGTTGCAACAATCCCAG
CACATGCATATATTATGGGAATCAACGTCTTCGGTTTGTTTTTGCGAAGC
CACATCAAAGATCCCAATGCAGCAAGGGAAATACTCAACACCAAATTCGC
ATTAGCTTCTAGCCCTTGAAGAAGGTAGTCCCAAGTAAACTCTAGTCCTC
TAGCACCCACCCAAAGTGGAGCCAATCTATGTAGAACAGAATCAGCAAAA
GCCCACCCCAGTCCAACAGCTTGAAATTTATGATTCTGAGAAATGTTCCT
GTGAGTCAACTGGGTTAAGGCAAAGTAAAGCCCAGCAACATCTATAAAAC
CGATCAATGCTTTCAACAGTTCCTGATATGGATCGAAGTTATCAGTCTCT
GATACCTTAAGAAACGTCGCTAAGCAAACAAGCTTAACAAGAGCTGTGCC
GAGATAAACGAGAGCCGCTTTCACAGAGGTACCAAGTGTATCATACTCG
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