CX047130

Overview
NameCX047130
Unique NameCX047130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1581 contig Csv1_Contig1581:93..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.052e-24
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKP 521
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AAL   MW R + P
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAAL-VWMWTRYDLP 164          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.052e-24
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKP 521
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AAL   MW R + P
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAAL-VWMWTRYDLP 164          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAALGSLMWLRKNKPKT 527
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ ++ R  PLWVGARG+EF W Y+    ++N +LV  I++AA+   M+ R + PK+
Sbjct:    1 MTLFHFGNCFSLAYFPYFITYKCSGLSEYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELIMSRCIPLWVGARGIEFDWKYIQMSFDSNISLVHYIAMAAV-VWMFTRYDLPKS 166          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 485
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 485
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 485
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of CX047130 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   24 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 485
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
The following BLAST results are available for this feature:
BLAST of CX047130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_XENTR4.052e-2436.31Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA4.052e-2436.31Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE3.431e-2335.29Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
TM147_RAT5.852e-2336.36Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE5.852e-2336.36Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN5.852e-2336.36Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN5.852e-2336.36Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12C08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C08-E15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047130 ID=CX047130; Name=CX047130; organism=Citrus sinensis; type=EST; length=841bp
GGAGAGAGGAAGGTTAGGTAAAGATGACGGTTTTTCACTTCTTCAACTGT
GCGATTCTGACTTTCGGCCCTCACGCCGTCTACTACTCCGCCACGCCCTT
ATCCGAGTATGATACACTTGGTACCTCTGTGAAAGCGGCTCTCGTTTATC
TCGGCACAGCTCTTGTTAAGCTTGTTTGCTTAGCGACGTTTCTTAAGGTA
TCAGAGACTGATAACTTCGATCCATATCAGGAACTGTTGAAAGCATTGAT
CGGTTTTATAGATGTTGCTGGGCTTTACTTTGCCTTAACCCAGTTGACTC
ACAGGAACATTTCTCAGAATCATAAATTTCAAGCTGTTGGACTGGGGTGG
GCTTTTGCTGATTCTGTTCTACATAGATTGGCTCCACTTTGGGTGGGTGC
TAGAGGACTAGAGTTTACTTGGGACTACCTTCTTCAAGGGCTAGAAGCTA
ATGCGAATTTGGTGTTGAGTATTTCCCTTGCTGCATTGGGATCTTTGATG
TGGCTTCGCAAAAACAAACCGAAGACGTTGATTCCCATAATATATGCATG
TGCTGGGATTGTTGCAACCATGCCATCTATTACAAGCTATTTGAGGCGGG
GATTGGGATGGCAAATTTCCAAAGGTGGTAGGCTTTGAACTTTTTACTTC
GTTGGTGATGGCATTCATTAGTTGGCAACTCTTCTCTGCGTGTCAGAGAC
CTTCTGCCTGACAGCCTGAGGAAGCCAAGCATTACTTCTGGACAGTTGGT
TGAGGCAGTTTTTTTGCAACAGCATAATTCTCTTAAAGAGGGCCTGTTCC
TATGAGCATATTCTCCTTATGGGACCTTATCACATACTGTT
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