CX047127

Overview
NameCX047127
Unique NameCX047127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1939 contig Csv1_Contig1939:160..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 361.688 bits (927), Expect = 2.596e-99
Identity = 177/190 (93.16%), Postives = 184/190 (96.84%), Query Frame = -3
Query:  213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782
            VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLV A+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD
Sbjct:   15 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.861e-97
Identity = 173/190 (91.05%), Postives = 182/190 (95.79%), Query Frame = -3
Query:  213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782
            VGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLV A+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSGWGGHVY+VTP E+KERILKGRMD
Sbjct:   15 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.925e-94
Identity = 164/190 (86.32%), Postives = 180/190 (94.74%), Query Frame = -3
Query:  213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782
            VGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLV ALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSGWGGHVY+V+P ++ ER LKGRMD
Sbjct:   15 VGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.380e-92
Identity = 161/190 (84.74%), Postives = 181/190 (95.26%), Query Frame = -3
Query:  213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782
            VGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLV ALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSGWGG V +VTPTE+KE ++KGRMD
Sbjct:   15 VGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.052e-60
Identity = 108/191 (56.54%), Postives = 142/191 (74.35%), Query Frame = -3
Query:  213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782
            VGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L+  +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSGWG  V+++TPT++  + L GR D
Sbjct:   15 VGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.011e-59
Identity = 104/189 (55.03%), Postives = 149/189 (78.84%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            GKNC AIASD RLGVQ  ++  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LV + LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SGWG  VY++T  +  +R++KGR D
Sbjct:   16 GKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 204          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 108/190 (56.84%), Postives = 145/190 (76.32%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            GK C AIA+DRR GVQ Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+V  LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG G  V ++   +I  R LK RMD
Sbjct:   16 GKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.441e-57
Identity = 109/190 (57.37%), Postives = 143/190 (75.26%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V  LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.193e-57
Identity = 108/190 (56.84%), Postives = 143/190 (75.26%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V  LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.477e-57
Identity = 107/190 (56.32%), Postives = 143/190 (75.26%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V  LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+++   +I  R LK RMD
Sbjct:   16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205          
The following BLAST results are available for this feature:
BLAST of CX047127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PSB3A_ARATH2.596e-9993.16Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH1.861e-9791.05Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA1.925e-9486.32Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ1.380e-9284.74Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_DICDI4.052e-6056.54Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3_SCHPO2.011e-5955.03Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_ONCMY1.103e-5756.84Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_HUMAN1.441e-5757.37Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_RAT4.193e-5756.84Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE5.477e-5756.32Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12C06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C06-E11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047127 ID=CX047127; Name=CX047127; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTTTTTTTTCCAGATAACCGCAAGCCCACGAACTTGGTCAAT
TCAGTTTGAAACTATTTCAAAGTACAACAATTTGAGAGCTATTAAACAAC
ATTCTTCATAAACAAATGAAAGTCAAGTTCAAGTCTACGGTCTTCTAATT
GAAAAATACTGGAGAGCGAACACAAGAAAAGGGGTGGCTTTCAGCACTGC
AGTTATAGATCAATCCATCCTTCCCTTCAAGATTCTTTCCTTTATTTCAG
TTGGTGTTACAATGTAAACATGTCCTCCCCAACCACTCAAACAGTCACGG
TCAACAGATGATAACAAAGCTTGAGATACAGTTTCAAACAACTCATCGGG
TTCCATATCAGGCTTGAACATTGCCTCACAGGCACCATAAAGAGACTCTC
CAGCAGTTCCAGCAACAACAAAATCTTTTGCAAGCTCCTTGGCTCCAATT
GAGTCCATTGTGCAGATAAAGGGCTTGTCTTCATCACTCAATCCAGCAAT
AACAGGTTGACAGAAGTAAGGGCCAAACCTTTTCTCATAAAGCAAAGCAA
AGACTAAGCTAGCAAAAGTTTCAGGCTTCATGTCCCTTTCCTCTCGCAGC
TGATACAATTTGTGACGAAACACCAGCCTTTGATACAAGGTCTGGGAATC
AGTGGCGAGTCCAGAGAGGCCGATAAAAAGGCGATCGTGAATTTTGGAAA
TTCGCTGAAAATCAGTGGCTATTGTCTGAAGCTGAACGCCGAGGCGCCGA
TCGCTGGCAATGGCAAAGCAGTTCTTTCCGACCA
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