CX047127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2) HSP 1 Score: 361.688 bits (927), Expect = 2.596e-99 Identity = 177/190 (93.16%), Postives = 184/190 (96.84%), Query Frame = -3 Query: 213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLV A+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD Sbjct: 15 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 1.861e-97 Identity = 173/190 (91.05%), Postives = 182/190 (95.79%), Query Frame = -3 Query: 213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLV A+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSGWGGHVY+VTP E+KERILKGRMD Sbjct: 15 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 1.925e-94 Identity = 164/190 (86.32%), Postives = 180/190 (94.74%), Query Frame = -3 Query: 213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782 VGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR FRHKLYQLREER+M+PETFASLV ALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSGWGGHVY+V+P ++ ER LKGRMD Sbjct: 15 VGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1) HSP 1 Score: 339.347 bits (869), Expect = 1.380e-92 Identity = 161/190 (84.74%), Postives = 181/190 (95.26%), Query Frame = -3 Query: 213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782 VGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLV ALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSGWGG V +VTPTE+KE ++KGRMD Sbjct: 15 VGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 4.052e-60 Identity = 108/191 (56.54%), Postives = 142/191 (74.35%), Query Frame = -3 Query: 213 VGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 782 VGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P ++L+ +LYEKRFGPYF +P+I GL D PFI MD IGA DF+V GT ++YG CE ++K DM D+LFET+SQ +L+S+DRD LSGWG V+++TPT++ + L GR D Sbjct: 15 VGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.011e-59 Identity = 104/189 (55.03%), Postives = 149/189 (78.84%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 GKNC AIASD RLGVQ ++ +F ++ + D+ ++GL+GLATD QTLY+ ++ LY+ REER ++P+TFA+LV + LYEKRFGPYF PV+AG+S+++ PFIC DSIG + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SGWG VY++T + +R++KGR D Sbjct: 16 GKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 204
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57 Identity = 108/190 (56.84%), Postives = 145/190 (76.32%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 GK C AIA+DRR GVQ Q + TDFQ+I + DRL+IGL+GLATD QT+ QRL FR LY+L+E R +KP+TF S+V LLYE+RFGPY+ +PVIAGL + +PFIC++D IG + +DFVV+GT E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG G V ++ +I R LK RMD Sbjct: 16 GKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 1.441e-57 Identity = 109/190 (57.37%), Postives = 143/190 (75.26%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD QT+ QRL FR LY+L+E R +KP T S+V LLYEKRFGPY+ +PVIAGL + KPFIC++D IG + DFVV+GT E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG G V+I+ +I R LK RMD Sbjct: 16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 4.193e-57 Identity = 108/190 (56.84%), Postives = 143/190 (75.26%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD QT+ QRL FR LY+L+E R +KP T S+V LLYEKRFGPY+ +PVIAGL + KPFIC++D IG + DFVV+GT E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G V+I+ +I R LK RMD Sbjct: 16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 5.477e-57 Identity = 107/190 (56.32%), Postives = 143/190 (75.26%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD QT+ QRL FR LY+L+E R +KP T S+V LLYEKRFGPY+ +PVIAGL + KPFIC++D IG + DFVV+GT E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G V+++ +I R LK RMD Sbjct: 16 GKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205 The following BLAST results are available for this feature:
BLAST of CX047127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047127 ID=CX047127; Name=CX047127; organism=Citrus sinensis; type=EST; length=784bpback to top |