CX047103

Overview
NameCX047103
Unique NameCX047103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4555 contig Csv1_Contig4555:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: M750_ARATH (Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana GN=AtMg00750 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  150 VLQCGFYWPTIFRDAYTFCSSCDRCQRMGSITRRNMMPLNPILVVEIFDVWGIDFM 317
            VLQ GFYWPT F+DA+ F SSCD CQR G+ T+RN MP + IL VE+FDVWGI FM
Sbjct:   35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90          
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  636 QLNYSTTEKEMLAVVFALEKFRSYLIGCKIIVFTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 893
            ++NYST EKE+LA+V+A + FR YL+G    + +DH  L +L   KD  ++L RW + L EFD + K  KG EN VAD LSR+  +
Sbjct:  542 EINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627          
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 83/290 (28.62%), Postives = 128/290 (44.14%), Query Frame = -1
Query:   63 AQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIVFTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDTIT----EPLILN--ESFPDEQLMNVEVLPWYADIVNYLVTGKLPEHWTKQDKAKFFAEI--KNFFWDDPYLFKYCADQIVRRCVPENEIQNILSFCHAKAC-GGHFSAKKTATKVLQCGFYWPTIFRDAYTFCSSCDRCQRMGSITRRNMMPLNPILVVE--IFDVWGIDFMGPFPPSFGH-QYILVGVDYVSKWVEAIPCR 896
            AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +NVVAD +SR  + TIT     P+     +S+     +   VL    ++  + VT +    +    K    +E   KN+  +D  +  Y  D++V   VP  +   ++   H     GGHF    T  K+    +YWP +      +  +C +CQ + S   R    L P+ + E    D+  +DF+   PP+  +   ILV VD  SK    I  R
Sbjct:  952 AQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIY-TITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMI--YYQDRLV---VPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPI-YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDI-SMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATR 1233          
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 83/290 (28.62%), Postives = 128/290 (44.14%), Query Frame = -1
Query:   63 AQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIVFTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDTIT----EPLILN--ESFPDEQLMNVEVLPWYADIVNYLVTGKLPEHWTKQDKAKFFAEI--KNFFWDDPYLFKYCADQIVRRCVPENEIQNILSFCHAKAC-GGHFSAKKTATKVLQCGFYWPTIFRDAYTFCSSCDRCQRMGSITRRNMMPLNPILVVE--IFDVWGIDFMGPFPPSFGH-QYILVGVDYVSKWVEAIPCR 896
            AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +NVVAD +SR  + TIT     P+     +S+     +   VL    ++  + VT +    +    K    +E   KN+  +D  +  Y  D++V   VP  +   ++   H     GGHF    T  K+    +YWP +      +  +C +CQ + S   R    L P+ + E    D+  +DF+   PP+  +   ILV VD  SK    I  R
Sbjct:  926 AQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVY-TITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMI--YYQDRLV---VPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPI-YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDI-SMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATR 1207          
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = -1
Query:  636 DAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIVFTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 899
            D +LNYS  EKE+LA+V+A + FR YL+G + ++ +DH  L++L   K+  A+L RW + L E+  +    KG EN VAD LSR+  +
Sbjct:  539 DHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626          
BLAST of CX047103 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  645 NYSTTEKEMLAVVFALEKFRSYLIGCKII-VFTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKDKKGTENVVADHLSRL 887
            NY+T EKEMLA++++L+  R+YL G   I V+TDH  L + L  ++  A+L RW   ++E++ E   K G  NVVAD LSR+
Sbjct:  474 NYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555          
The following BLAST results are available for this feature:
BLAST of CX047103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
M750_ARATH4.513e-1667.86Uncharacterized mitochondrial protein AtMg00750 OS... [more]
POL3_DROME3.821e-1546.51Retrovirus-related Pol polyprotein from transposon... [more]
YI31B_YEAST1.452e-1428.62Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST1.452e-1428.62Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL2_DROME1.605e-1343.18Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME2.318e-1245.12Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12B06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B06-C11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047103 ID=CX047103; Name=CX047103; organism=Citrus sinensis; type=EST; length=899bp
GAATCCAAAGCGTGAAACAATGTTGCTTTTCAAAATCCTATCACCACTTT
GTGATCATTGGTCCTACATGGAATTGCTTCTACCCATTTCGAGACGTAGT
CAACACCAACCAATATGTATTGATGACCAAAAGACGGAGGAAAGGGTCCC
ATGAAGTCGATACCCCATACGTCAAAAATCTCAACCACTAAAATTGGATT
TAGTGGCATCATGTTCCTTCGTGTAATGCTCCCCATTCGTTGACACCTAT
CACATGAAGAACAGAAAGTGTAAGCATCTCGAAATATAGTTGGCCAATAA
AAACCACATTGTAAAACTTTAGTCGCGGTTTTCTTAGCACTGAAGTGGCC
TCCACAAGCTTTTGCATGGCAGAATGAAAGAATATTCTGAATTTCATTTT
CAGGGACACATCGTCTAACAATTTGGTCTGCACAATACTTGAACAAATAT
GGGTCATCCCAAAAGAAATTCTTTATTTCTGCAAAGAATTTAGCCTTGTC
TTGCTTGGTCCAATGCTCTGGAAGTTTACCTGTAACAAGATAATTAACTA
TATCAGCATACCAAGGTAATACTTCCACATTCATTAACTGTTCATCTGGA
AATGACTCATTTAATATTAATGGCTCTGTAATTGTGTCAAAATGGAGACG
AGAGAGATGGTCCGCCACAACATTTTCTGTCCCTTTCTTATCTTTGAATT
CCAAGTCAAATTCCTGCAAAAGTAACACCCAACGAATTAGTCTAGCTTTT
GCATCTTTCTTTGTGAGAAGATATTTAAGAGCAGCATGATCTGTGAACAC
AATTATTTTACAACCAATGAGATAAGATCGAAATTTTTCCAATGCAAACA
CTACTGCTAGCATTTCTTTTTCAGTAGTTGAATAATTCAACTGTGCATC
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