CX047084

Overview
NameCX047084
Unique NameCX047084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047084 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 2.023e-105
Identity = 182/215 (84.65%), Postives = 201/215 (93.49%), Query Frame = -3
Query:  177 EATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 821
            EATVV +LAS+CLQYEPRERPNTKDLV+TLAPLQ + DVPSYVMLGI + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRGD +FREK+FKTA+DCYSQFIDVGTMVSPTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  298 EATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CX047084 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.812e-61
Identity = 113/208 (54.33%), Postives = 157/208 (75.48%), Query Frame = -3
Query:  198 EATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 821
            EA VV+ LAS+CL+YE +E PNTK++V+TL  LQ R + PSY ++ +   E+   +  + LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ GD AF E++FKTA+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  259 EANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSN-LSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CX047084 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.207e-58
Identity = 116/209 (55.50%), Postives = 144/209 (68.90%), Query Frame = -3
Query:  198 EATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 821
            + T +  LASRCLQYEPRERPN K LVS + PLQ   ++ S+ +LG+P            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+GD AFR K+F  A++CYSQFI+VGTM SPTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  281 DGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPNSATTTA-----LSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CX047084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH2.023e-10584.65Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH6.812e-6154.33Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH9.207e-5855.50Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A08-A15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047084 ID=CX047084; Name=CX047084; organism=Citrus sinensis; type=EST; length=823bp
AAAAAGAAAAAAATAGCACAACAGACAAGTACAGAACAAGTCTGTCCTCC
CTCTATGGTACATTTTGGAAGAAAACCATATTCCTAATTTCAAATTACAT
AAAGCCCAAATGCTTTCTTACAACCACCACAACAATTGATTGAACACAGG
CTACAAAAGAATATTACAGCTTCTCAAGAACCTCTCCCACTCCGTTGCCT
TTTTTCTTCTAATGAGGCAGCCTCCTTTAACATATCAGCTGCATCCTTGT
GCATGTCCAACTTCGCAAGGGCAACAGCCTGCATGTAAAATGCTGTGGAC
CAGTCGGGATAAACACATTGTGCTTGCATTGCATCTCTAAGTGCAGCATC
TGGCTGGTCACACATTAAATGACAAAGACTTCTCCGTGCATAGACAGTTG
GTGAAACCATGGTTCCCACGTCTATAAACTGAGAATAGCAATCTACGGCA
GTTTTAAATTCTTTCTCTCGGAATGCCACATCCCCACGCTTTCTAGCCTC
CAACATATCTCTCATTTGTTGGGTCCACTCTTGAAAAGACAACTCATTGG
TTCCTTCATCATCTTTGTAGTGTGTCATCACCAAGATCTGGTGGATGGCT
GTGAGGTCCATCCGTGAACAAGCATCACCCATTGGAGAAAGAGGGTGCTG
TGGAGTAGGAGGTGCTTCCTCATGCCTTGGAATTCCCAGCATCACATAAG
AAGGAACATCAGGTCTATTTTGTAGGGGAGCAAGTGTAGAAACAAGATCT
TTTGTATTTGGCCGCTCCCTAGGCTCATATTGCAAACACCGTGAAGCAAG
ATCAAAGACAACTGTTGCCTCTT
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