CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3824 contig Csv1_Contig3824:720..1638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PARUW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.117e-45
Identity = 79/136 (58.09%), Postives = 108/136 (79.41%), Query Frame = -1
Query:  488 WSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRR 895
            W+ I+S +   Q+IPV+ AW+LNERMYG LQG+NK+E A +YG EQVH+WRRS+D+PPPNGESL+M A R + YF++ I P L+  KN+ IAAHGNSLRSIIM LD LT+ +V+ LEL+TG+P++Y F   ++I++
Sbjct:   89 WASIYSSESQSQTIPVIRAWELNERMYGELQGINKEEMAKKYGAEQVHIWRRSFDVPPPNGESLQMTAARTIPYFENTIVPHLKEKKNIFIAAHGNSLRSIIMKLDGLTTDQVVKLELATGVPVIYDFNHDEYIKQ 224          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLMU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia muridarum GN=gpmA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.770e-37
Identity = 78/140 (55.71%), Postives = 103/140 (73.57%), Query Frame = -1
Query:  491 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIR 910
            E+    S+I SE  ++Q IP+  +  LNERMYG LQG NKQE A+++G+EQV +WRRSY I PP GESL   AQR + YF+ +I P +Q GKN+ I+AHGNSLRS+IM L+KLT +EV+SLEL TG P++Y + E KF +
Sbjct:   81 EERPDMSRIHSEKELEQMIPLFQSSALNERMYGELQGKNKQEVAEQFGEEQVRLWRRSYKIAPPQGESLFDTAQRTLPYFQKRIFPLIQQGKNIFISAHGNSLRSLIMDLEKLTEEEVLSLELPTGKPIVYEWTEQKFTK 220          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLFF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydophila felis (strain Fe/C-56) GN=gpmA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.063e-36
Identity = 78/149 (52.35%), Postives = 108/149 (72.48%), Query Frame = -1
Query:  473 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 919
            +++ Q +  S+I+SE+  +  IP+  +  LNERMYG LQG NKQETA+++G+EQV +WRRSY I PP GESL    QR + YF++ I P LQ+ KNV I+AHGNSLRS+IM ++KL+ +EV+SLEL TG P++Y++    F RR  P G
Sbjct:   80 HDAPQQKQMSRIYSEEE-QHMIPLYRSSALNERMYGELQGKNKQETAEQFGEEQVKLWRRSYKIAPPKGESLYDTGQRTIPYFQETIFPLLQNSKNVFISAHGNSLRSLIMDIEKLSEEEVLSLELPTGKPLVYLWTGHTFERRPEPFG 227          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis GN=gpmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.418e-35
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -1
Query:  473 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 910
            E+    S+I S+  M+Q IP+  +  LNERMYG LQG NKQE A ++G+EQV +WRRSY I PP GESL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:   81 EERPDMSRIHSQKEMEQMIPLFQSSALNERMYGELQGKNKQEVAAQFGEEQVKLWRRSYRIAPPQGESLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=gpmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.418e-35
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -1
Query:  473 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 910
            E+    S+I S+  M+Q IP+  +  LNERMYG LQG NKQE A ++G+EQV +WRRSY I PP GESL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:   81 EERPDMSRIHSQKEMEQMIPLFQSSALNERMYGELQGKNKQEVAAQFGEEQVKLWRRSYRIAPPQGESLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=gpmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.418e-35
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -1
Query:  473 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 910
            E+    S+I S+  M+Q IP+  +  LNERMYG LQG NKQE A ++G+EQV +WRRSY I PP GESL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:   81 EERPDMSRIHSQKEMEQMIPLFQSSALNERMYGELQGKNKQEVAAQFGEEQVKLWRRSYRIAPPQGESLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLT2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=gpmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.464e-35
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -1
Query:  473 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 910
            E+    S+I S+  M+Q IP+  +  LNERMYG LQG NKQE A ++G+EQV +WRRSY I PP GESL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:   81 EERPDMSRIHSQKEMEQMIPLFQSSALNERMYGELQGKNKQEVAVQFGEEQVKLWRRSYRIAPPQGESLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLCV (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydophila caviae GN=gpmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.464e-35
Identity = 76/149 (51.01%), Postives = 105/149 (70.47%), Query Frame = -1
Query:  473 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAG 919
            ++ EQ +  S+I+S++  K  IP+  +  LNERMYG LQG NK+ETA+ +G+EQV +WRRSY I PP GESL     R V YF++ I P L++ KNV I+AHGNSLRS+IM ++KL+ +EV+SLEL TG P++Y++    F R   P G
Sbjct:   80 HDDEQQKLMSRIYSDEE-KSMIPLYRSSALNERMYGELQGKNKKETAEEFGEEQVKLWRRSYKISPPGGESLYDTGLRTVPYFQETIFPLLKNSKNVFISAHGNSLRSLIMDIEKLSEEEVLSLELPTGKPIVYLWTGHTFERHPEPLG 227          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLPN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia pneumoniae GN=gpmA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.831e-35
Identity = 73/140 (52.14%), Postives = 102/140 (72.86%), Query Frame = -1
Query:  500 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGK 919
            +E  +A+  S+I+S +     IP+  +  LNERMYG LQG NK++TA+++G+E+V +WRRSY   PP GESL    QR + YF+  I PQLQ+GKNV ++AHGNSLRS+IM L+KL+ +EV+SLEL TG P++Y +K  K
Sbjct:   80 HEDPKAKEMSRIYSAEEENNMIPLYQSSALNERMYGELQGKNKKQTAEQFGEERVKLWRRSYKTAPPQGESLYDTKQRTLPYFEKNILPQLQNGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPVVYQWKNHK 219          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METVS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gpmA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.100e-33
Identity = 69/145 (47.59%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  485 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRG 919
            ++S + + W +++  + +  + PV  +W+LNER YG LQGLNK+   + YGK+ V +WRRSY+  PPNGESL+   +R V Y K  I P L  GK+V++ AHGNSLRSII YL+KL S+EV+ LE+ TG+P++Y   E    R G
Sbjct:   80 HDSVKMKEWGKVYGAESINYT-PVYKSWELNERYYGKLQGLNKERAKEIYGKDDVFLWRRSYETAPPNGESLKDTYERTVPYLKRYILPTLTYGKDVIVTAHGNSLRSIIAYLEKLNSEEVLKLEIPTGVPLVYNLDEKGLKRLG 223          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_PARUW8.117e-4558.092,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLMU4.770e-3755.712,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLFF1.063e-3652.352,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTR3.418e-3552.052,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTB3.418e-3552.052,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTA3.418e-3552.052,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLT24.464e-3552.052,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLCV4.464e-3551.012,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLPN5.831e-3552.142,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METVS1.100e-3347.592,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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