CX047078

Overview
NameCX047078
Unique NameCX047078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047078_ssr96 microsatellite CX047078_ssr96:96..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047078 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:  492 VARFPGKSQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARR 710
            V RF GKS+EE A I IQ+ FRG+               K L++G  V+RQA  TL+CMQTL+RVQSQIR+RR
Sbjct:   98 VNRFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRR 170
The following BLAST results are available for this feature:
BLAST of CX047078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD1_ARATH1.023e-1152.05Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12A05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A05-A9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047078 ID=CX047078; Name=CX047078; organism=Citrus sinensis; type=EST; length=710bp
CTTCTGTATCATACAGAAGAAGCATTGGTTCATTAACTTCATTTTGTAAT
TTTTTTTTTTTTTGGTTCTTATTTTATAAAGAGAGCAATATAGAGAGAGA
AGAGAAGAGAACAGAAGACAAGAGGAGAATGTTTTTGGAACTAACAGAGA
TCTGACTCCAGGAAATGGGAAAGAAAGGGAGTTGGTTTTCTGCAGTGAAG
AAAGTTCTCAGCTCTGAACAAAAAGATAAGAAAGACCAGAAAACAATTAA
ATTGAAGAAAAAATGGTTTGGCAAGCAAAAGAGCTCTGGTGCTGTTTTGT
CGTCTGAAGAAAATCTCGCAGTTTCTGTTCCTGTCCCTCATCCTTGTTCA
GCTGATGAAGATGCAAAATTAATTGAATCCGAGAATAAGCAGAACAAGCA
TGCATACACTGTGGCTCTTGCCACTGCAGTGGCTGCTGAGGCGGCTGTTG
CAGCTGCTCAGGCTGCTGCAGAGGTTGTACGCCTCACTGCTGTGGCACGC
TTCCCTGGAAAATCACAGGAGGAAATTGCGGTTATCAAGATTCAAACAGC
ATTCCGGGGATACTTGGCAAGGAGGGCATTGCGGGCTTTGAGAGGGCTGG
TGAGGCTGAAATCCTTGATACAAGGACACTCCGTAAAGCGGCAAGCAACC
ACCACATTAAGATGCATGCAGACTCTTGCTCGTGTTCAGTCTCAGATTCG
GGCAAGGAGG
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