CX047043

Overview
NameCX047043
Unique NameCX047043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig983 contig Csv1_Contig983:7..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.486e-68
Identity = 133/252 (52.78%), Postives = 166/252 (65.87%), Query Frame = 2
Query:   35 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGA 790
            ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DMD++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF EA+   P              E+L  VG  C  +++ KLN      P+ E DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RHPNDS HD + G+
Sbjct:   15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRHPNDSIHDIDIGS 261          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.619e-65
Identity = 128/255 (50.20%), Postives = 165/255 (64.71%), Query Frame = 2
Query:   44 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKI-----ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD 793
            +W +LP+ +TS+IL ++GAI++L +AQ+VC  W R+C DP+MWR ID+ N  D     +DLE MCRHAVDRS+G L+ I I Y+GT++L+ YIA           V C+ I+D+G  +A+   P              E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILD CPHLE LDLRQCFN+NLVG L K C ERI+DLR PNDS  D + G+D
Sbjct:  180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDLRCPNDSDDDSDDGSD 430          

HSP 2 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  548 DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGA 790
            DD+  AIAE M  LRHL+LFGN LTN+ L+AILD C HL  LDLR+CFN+NL+G L K C+ERIRDLR P+DST D  F A
Sbjct:   19 DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSERIRDLRRPDDSTADSPFDA 99          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.769e-57
Identity = 120/270 (44.44%), Postives = 159/270 (58.89%), Query Frame = 2
Query:   29 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRC----------PKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLES-LDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF 805
            ++E  +W  LP ++T++IL ++   D+L +A+++C +W RIC DP+MWR I   NL D    + D E MCRH VD S G LL INIE+F +D LL YI                 ++++G    I+  P              + L+A+G  CP L++ KLN+ G             P +ECDDDA AIAE+M  LRHLQL GN LTN GL AILD CPHLE  LD+R+CFN+NLVG L K C +RI++LR P+DST DY FG    DF
Sbjct:   34 DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDSTADYPFGQASPDF 299          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.281e-50
Identity = 113/267 (42.32%), Postives = 147/267 (55.06%), Query Frame = 2
Query:   32 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI-EYFGTDELLQYIAXXXXXXXXXXXVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPK--------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 784
            +E  +W  LP ++T++IL ++   D+L +AQ+VC  W RIC DP+MWR I   N  D    + D   MCRH VD S G LL IN+ E+F +D LL YI              C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P               +ECDDDA AIAE+M  L HLQL  N LTN GL AILD CPHLE LD+R+CF ++LVG L K C E I++LR P DST DY +
Sbjct:   41 KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGM--CFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDSTADYPY 301          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.538e-50
Identity = 111/262 (42.37%), Postives = 148/262 (56.49%), Query Frame = 2
Query:    5 SRMSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 784
            S++     E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP +WR IDM NL  L+ + + +E  CRH VD S G LL  NI+   F T  LL Y+A           V    I+  G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA AIA+ M GL HLQL  N LTN+GL AILD CPHLE LDLRQCFN+NL G L + C ERI+D R PND   DY +
Sbjct:   13 SQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDFRCPNDVLDDYNY 270          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.175e-45
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 2
Query:   44 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH---NLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEA-LEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 721
            +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP+MWR ID+    NL +  ++ + +E +C  AVD S G LL INI+Y      L YIA           V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AIAE M GLRHLQLF N L+  GL AIL+ CPHL++L L QC N+N+VG + K
Sbjct:   20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246          
BLAST of CX047043 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.472e-15
Identity = 66/248 (26.61%), Postives = 106/248 (42.74%), Query Frame = 2
Query:   29 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD-------LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCE-AIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN----NRGH----------RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVN 700
            E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D       LW  + +  ++ M R  VD S G L  I + +  +D  L Y A            S  N++D    + A +                 + L  +G  CP LR  K N    +  H           CP+ + D +A AI ++M  L HL++  + L+  GL +I + CP LE LDL  C +++
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQ-DGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHLS 247          
The following BLAST results are available for this feature:
BLAST of CX047043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SKI19_ARATH3.486e-6852.78F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH1.619e-6550.20Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FB221_ARATH2.769e-5744.44Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL21_ARATH4.281e-5042.32Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL22_ARATH9.538e-5042.37Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FBL9_ARATH3.175e-4543.72Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
SKIP1_ARATH4.472e-1526.61F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11G09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11G09-N18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047043 ID=CX047043; Name=CX047043; organism=Citrus sinensis; type=EST; length=841bp
CATTAGCAGAATGAGCACAGGCACGGCGGAGCAAGAATCATGCGACTGGA
CGCAGTTGCCGGCGGACGTGACGTCCACGATTCTATCAAAAATCGGCGCC
ATCGATGTGCTGACGAGCGCGCAACGTGTGTGCTCTTCTTGGCTGAGGAT
CTGCCACGATCCCGCCATGTGGCGGAACATTGACATGCACAACTTAGGAG
ATTTGTGGGACATGGACCATGACTTGGAGAAGATGTGCCGCCACGCTGTT
GACCGTAGCAACGGCCAATTGCTCTCCATCAATATCGAGTACTTCGGTAC
CGATGAGCTTCTCCAATACATCGCTAATAGGTCAAGGAATCTCAGGAATC
TCAGACTTGTGTCATGTTATAACATTTCAGACCAAGGATTTTGTGAAGCT
ATTAAAGGGTTTCCACTGCTCGAGGAGCTTGAACTTTCATACTGCTCATT
ATCACAAGAAGCATTGGAAGCTGTTGGGAGCCTTTGCCCACTTCTGAGAT
CATTTAAATTGAACAACCGGGGTCACAGGTGCCCAAAAATAGAGTGTGAT
GATGATGCGAAAGCTATAGCAGAAAACATGCATGGATTGCGCCATCTCCA
GTTATTTGGAAACGAGCTGACAAATGTGGGGTTGCAGGCTATTCTTGATG
CCTGTCCTCACCTTGAATCACTTGACCTGCGCCAGTGTTTCAATGTCAAT
CTGGTTGGGAAATTGGGGAAGATATGTGCTGAGAGAATCAGAGATTTACG
ACATCCCAATGACTCTACCCATGACTATGAATTCGGTGCAGATTTTCAAG
ATTTTTGTTGGTCATCTGTAGAAAATACCCATCTGGTATTT
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