CX047042

Overview
NameCX047042
Unique NameCX047042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig983 contig Csv1_Contig983:306..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.273e-38
Identity = 87/169 (51.48%), Postives = 109/169 (64.50%), Query Frame = -3
Query:  416 DELLQYIANSQXNLRNLRLVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXSQEALEAVGSLCPLLRSFKLNNRGHRCPKIEC-----DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD 907
            ++L+ YIA+   NL++L LV C+ I+D+G  +A+   P            S E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILD CPHLE LDLRQCFN+NLVG L K C ERI+DLR PNDS  D + G+D
Sbjct:  266 NDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDLRCPNDSDDDSDDGSD 430          

HSP 2 Score: 107.457 bits (267), Expect = 1.127e-22
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  380 DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDY 661
            DD+  AIAE M  LRHL+LFGN LTN+ L+AILD C HL  LDLR+CFN+NL+G L K C+ERIRDLR P+DST D  F A   D   +  +DY
Sbjct:   19 DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSERIRDLRRPDDSTADSPFDAS-SDIYSAGEDDY 111          
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.056e-36
Identity = 88/185 (47.57%), Postives = 111/185 (60.00%), Query Frame = -3
Query:  350 ELLQYIANSQXNLRNLRLVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 904
            +LL YIA+   NLR+LRL+ C  I+D GF EA+   P              E+L  VG  C  +++ KLN      P+ E DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RHPNDS HD + G        SS ++ P   SDI+L+
Sbjct:  105 DLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRHPNDSIHDIDIG--------SSEDEDPYDFSDIDLM 276          
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.284e-34
Identity = 84/195 (43.08%), Postives = 111/195 (56.92%), Query Frame = -3
Query:  356 DELLQYIANSQXNLRNLRLVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXSQEALEAVGSLCPLLRSFKLNNRGHRC----------PKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLES-LDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE 907
            D LL YI +   NL++L +     ++++G    I+  P              + L+A+G  CP L++ KLN+ G             P +ECDDDA AIAE+M  LRHLQL GN LTN GL AILD CPHLE  LD+R+CFN+NLVG L K C +RI++LR P+DST DY FG    DF  +  +    G  + E
Sbjct:  122 DSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDSTADYPFGQASPDFAMNLEDKVTFGRQESE 315          
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.593e-31
Identity = 82/187 (43.85%), Postives = 98/187 (52.41%), Query Frame = -3
Query:  356 LLQYIANSQXNLRNLRLVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF-----GADFQDFCWSSVEDYPSGISDIE 901
            LL Y+A    NLR LR V    I+  G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA AIA+ M GL HLQL  N LTN+GL AILD CPHLE LDLRQCFN+NL G L + C ERI+D R PND   DY +         +D      E+Y  G  D E
Sbjct:  115 LLNYMAERSSNLRRLR-VKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDFRCPNDVLDDYNYVIFSDNGSIEDEKGEEEENYSYGSDDTE 298          
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.469e-30
Identity = 78/176 (44.32%), Postives = 98/176 (55.68%), Query Frame = -3
Query:  425 DELLQYIANSQXNLRNLRLVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXSQEALEAVGSLCPLLRSFKLNNRGHRCPK--------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 907
            D LL YI +   NLR+L L  C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P               +ECDDDA AIAE+M  L HLQL  N LTN GL AILD CPHLE LD+R+CF ++LVG L K C E I++LR P DST DY +
Sbjct:  129 DSLLSYITDR--NLRSLGLGMCFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDSTADYPY 301          
BLAST of CX047042 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 63/139 (45.32%), Postives = 78/139 (56.12%), Query Frame = -3
Query:  488 LQYIANSQXNLRNLRLVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXSQEA-LEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 898
            L YIA+   NLR L +V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AIAE M GLRHLQLF N L+  GL AIL+ CPHL++L L QC N+N+VG + K
Sbjct:  112 LNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246          
The following BLAST results are available for this feature:
BLAST of CX047042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FBL23_ARATH7.273e-3851.48Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
SKI19_ARATH3.056e-3647.57F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FB221_ARATH1.284e-3443.08Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL22_ARATH6.593e-3143.85Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FBL21_ARATH1.469e-3044.32Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL9_ARATH1.472e-2245.32Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11G09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11G09-N18-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047042 ID=CX047042; Name=CX047042; organism=Citrus sinensis; type=EST; length=909bp
TTTTAGCTTCTTCAACATTCCATTTTATCACGACGGCCTAGCATACTTCT
GCAACAAACAAAATTACAATAATTCACACGTACTAGAGAGGGGGAATGCA
TAGAATAAAGCAAGAGTCTTCAGTCTCATGTTTGACACACAAGGTAGAAA
GTGATAATAAAGTCATAACACAAACCAAGGAAATATCAGCGAATGACCAT
AGACAAACCAAGGGAGATGACATAAGTACTAACATCTCAACTCTCTCTTA
TTCTACCAAACTTGACCCCTAATCATTAAACAAATAGTCATAGTCAAAGT
CATAGCCAAAGTCATAATCAGAGAACTCATAGTAATCATCTTCATCAGAC
ACAAGCTCAATATCGGAAATACCAGATGGGTAATCTTCTACAGATGACCA
ACAAAAATCTTGAAAATCTGCACCGAATTCATAGTCATGGGTAGAGTCAT
TGGGATGTCGTAAATCTCTGATTCTCTCAGCACATATCTTCCCCAATTTC
CCAACCAGATTGACATTGAAACACTGGCGCAGGTCAAGTGATTCAAGGTG
AGGACAGGCATCAAGAATAGCCTGCAACCCCACATTTGTCAGCTCGTTTC
CAAATAACTGGAGATGGCGCAATCCATGCATGTTTTCTGCTATAGCTTTC
GCATCATCATCACACTCTATTTTTGGGCACCTGTGACCCCGGTTGTTCAA
TTTAAATGATCTCAGAAGTGGGCAAAGGCTCCCAACAGCTTCCAATGCTT
CTTGTGATAATGAGCAGTATGAAAGTTCAAGCTCCTCGAGCAGTGGAAAC
CCTTTAATAGCTTCACAAAATCCTTGGTCTGAAATGTTATAACATGACAC
AAGTCTGAGATTCCTGAGATTCCNTTGACTATTAGCGATGTATTGGAGAA
GCTCATCGG
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