CX047018

Overview
NameCX047018
Unique NameCX047018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047018_ssr647 microsatellite CX047018_ssr647:647..658. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2997 contig Csv1_Contig2997:181..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 272.322 bits (695), Expect = 2.632e-72
Identity = 134/198 (67.68%), Postives = 163/198 (82.32%), Query Frame = 2
Query:   23 VGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGT 616
            V ED  D  D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L+KKTKK  KVEVGT +T+AS+DEWL+GT
Sbjct:   47 VEEDDHDL-DMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGT 243          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 64/192 (33.33%), Postives = 98/192 (51.04%), Query Frame = 2
Query:   62 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHG------QVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA 619
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +   G  ++G      +V+ +SK  K A +VE     T+    EWL GT+
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVE-----TEDETAEWLSGTS 219          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_PONAB (Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 55/199 (27.64%), Postives = 93/199 (46.73%), Query Frame = 2
Query:   20 IVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   64 LVEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL---HQLLESRKRKRPVQKVEMGTSSQNDVDMSWI 256          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_HUMAN (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 55/199 (27.64%), Postives = 93/199 (46.73%), Query Frame = 2
Query:   20 IVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   64 LVEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL---HQLLESRKRKRPIQKVEMGTSSQNDVDMSWI 256          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_RAT (Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 56/200 (28.00%), Postives = 95/200 (47.50%), Query Frame = 2
Query:   23 VGEDAQDFGDGTFSP--APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            + E+ ++  D +  P  +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   64 LAEEKEEEEDVSSEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL---HQLLESRKRKRPIQKVEMGTSSQNDVDMSWI 257          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_BOVIN (Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 54/193 (27.98%), Postives = 90/193 (46.63%), Query Frame = 2
Query:   38 QDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +D   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   70 EDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL---HQLLESRKRKRPIQKVEMGTSSQNDVDMSWI 256          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_MOUSE (Translocon-associated protein subunit alpha OS=Mus musculus GN=Ssr1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.220e-12
Identity = 53/183 (28.96%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   68 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   80 SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL---HQLLESRKRKRPIQKVEMGTSSQNDVDMSWI 256          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_CANFA (Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   68 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + +     W+
Sbjct:   80 SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL---HQLLESRKRKRPIQKVEMGTSSQNDVDMSWI 256          
BLAST of CX047018 vs. ExPASy Swiss-Prot
Match: SSRA_ONCMY (Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss GN=ssr1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 2
Query:   38 QDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQ-HPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 607
            +D   G  +  P  DT  +F   +     A E  + LVG  N G     V +++AS   P D    +QN T    +    P   QA+F Y F  ++ +    F LV  + Y+  + + +Q+  YN T+ +VE    +  E++F+     G+ +L +FG++   QV +   + +   KVE GTG  +     W+
Sbjct:   71 EDAAVGDVTSHPDADTTIVFV--TGEEFPANEIVKFLVGFTNKGSQDFTVHSLEASFRYPQDFQFYIQNFTALPLSTVVQP-QKQASFEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQTAIYNQTVTIVELEEGLDGETIFMYIFLTGLVVLAVFGMY---QVLESRTRKRFPVKVETGTGGMNGVDISWI 257          
The following BLAST results are available for this feature:
BLAST of CX047018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SSRA_ARATH2.632e-7267.68Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI2.338e-2033.33Translocon-associated protein subunit alpha OS=Dic... [more]
SSRA_PONAB1.794e-1227.64Translocon-associated protein subunit alpha OS=Pon... [more]
SSRA_HUMAN2.343e-1227.64Translocon-associated protein subunit alpha OS=Hom... [more]
SSRA_RAT3.997e-1228.00Translocon-associated protein subunit alpha OS=Rat... [more]
SSRA_BOVIN3.997e-1227.98Translocon-associated protein subunit alpha OS=Bos... [more]
SSRA_MOUSE5.220e-1228.96Translocon-associated protein subunit alpha OS=Mus... [more]
SSRA_CANFA6.818e-1228.42Translocon-associated protein subunit alpha OS=Can... [more]
SSRA_ONCMY1.519e-1126.94Translocon-associated protein subunit alpha OS=Onc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11F07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F07-L14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047018 ID=CX047018; Name=CX047018; organism=Citrus sinensis; type=EST; length=905bp
CGAAGGGGGTGATCTTGGGATTGTTGGTGAGGATGCTCAAGATTTTGGTG
ATGGGACTTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTATCTTCCCT
AAAAATAGCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGAACTACTGGT
TGGGATGAAAAATGATGGGGAGTCAAGCGTGAATGTGATTGCAATTCAGG
CCAGTGTTCATCTCCCTTTTGATCACAGTCTTTTGGTTCAAAATCTCACT
GGACAGGCCTTTAACAATGCAACTGTGCCGGTATCAGCTCAGGCTACCTT
TCCATACATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACTTTTGATC
TTGTGGGCTCCATTGTTTATGAGGTAGACCAGCATCCTTACCAAAGCACC
TTCTACAATGGTACCATTGAAGTTGTTGAATCTGGTGGGTTCATCAGCAT
TGAGTCCGTTTTTCTTGTTACCCTTGGAATTGCGCTTCTCGTCCTTTTTG
GGTTATGGATTCATGGTCAAGTCAAACAATTGTCCAAGAAAACTAAGAAG
GCTCCAAAGGTGGAAGTTGGTACAGGAACTACAGATGCCTCAATGGACGA
ATGGCTTCAGGGAACTGCATATACTCAGTCATTGTCCAGCAAATCAAAGA
AGAAGAAGTAGATGAGCAACTATTGCCCAGTACAGCTGCATCAGGCATTC
TGGTGAAGTGCGAACTCTTGTAACTCACGCTAGGAATTTGGAAATTTTAG
AGAGCATACGAGTGGAAGTAGTTTTGGGAAGTAGGCCAGAAAAGACCTGC
CTTGCTGTTGTAGCTTTTGGAAAGAAATCATAGATATTTATATTTTCTCG
GAGATTCTAAAAAGGTTGAGCCATTTTGAAGGGAAACTAACTCTGATTTT
GAGTA
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