CX047008

Overview
NameCX047008
Unique NameCX047008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047008_ssr144 microsatellite CX047008_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.157e-82
Identity = 139/173 (80.35%), Postives = 161/173 (93.06%), Query Frame = -3
Query:  261 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGL-VEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 776
            MAASVDPLVVGRVIGDV+DMF+P+  MSVY+G KH+TNGC++KPS A +PPK+NI+GHSDELYTLVMTDPDAPSPSEP MREWVHWIVVDIPGGTNP++G EILPYM PRPPVGIHRYI+VLF+Q +P+GL V+QPP+RANF+TR+FAG+ DLGLPVAT+YFN QKEPASRRR
Sbjct:    1 MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHSDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.268e-44
Identity = 89/169 (52.66%), Postives = 118/169 (69.82%), Query Frame = -3
Query:  261 DPLVVGRVIGDVVDMFVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 761
            DPLV+GRVIG+VVD F PSV MSV Y S KHV NG ++ PS  TS P++ + G      +T++M DPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+QK    ++  P +R  FNTR FA   +LG PVA ++FNCQ+E A+RRR
Sbjct:    7 DPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.268e-44
Identity = 90/169 (53.25%), Postives = 117/169 (69.23%), Query Frame = -3
Query:  261 DPLVVGRVIGDVVDMFVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 761
            DPLV+GRVIG+VVD F PSV MSV Y S KHV NG ++ PS  TS P++ + G      +TL+M DPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+QK    L+  P +R  FNTR F+   +LG PVA  +FNCQ+E A+RRR
Sbjct:    7 DPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.279e-44
Identity = 94/181 (51.93%), Postives = 121/181 (66.85%), Query Frame = -3
Query:  261 MAASV--DPLVVGRVIGDVVDMFVPSVGMSVYYGS----KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPT--RANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 776
            MAA V  DPLV+GRVIGDVVD F  +V MSV Y S    KHV NG ++ PS  TS P++ + G      +TL+MTDPD P PS+P +RE +HWIV DIPG T+ + G E++ Y  PRP +GIHR++ +LF+QK     +  PP   R  FNTR F    +LGLPVA ++FNCQ+E A+RRR
Sbjct:    1 MAAKVSSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.048e-43
Identity = 91/171 (53.22%), Postives = 117/171 (68.42%), Query Frame = -3
Query:  261 SVDPLVVGRVIGDVVDMFVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 767
            S DPL+VGRVIGDVVD  + +V M+V Y S K V NG ++ PS+ T  PK+ + G      +TLVMTDPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+Q     +V  P  R  FNTR FA   DLGLPVA ++FNCQ+E A+RRR
Sbjct:    5 SSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.342e-42
Identity = 81/169 (47.93%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  261 VDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 764
            ++PL++GRV+GDV+D F P+  M+V Y  K V+NG ++ PS  +S P++ I G      +TLVM DPD P PS+P ++E +HWIV +IPG T+   G E++ Y  PRP +GIHR++ VLF+QK    +    P+R +FNTR FA   DLGLPVA ++FN Q+E A+R+R
Sbjct:    9 IEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.813e-42
Identity = 84/169 (49.70%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  261 DPLVVGRVIGDVVDMFVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 761
            +PLV+GRVIG+VVD F PSV MSV Y + KHV NG +  PS  TS P++ + G      +TL+M DPD P PS+P +RE +HWIV DIPG T+ + G E++ Y  PRP +GIHR++ +LF+QK    +   P +R  F++R F+   +LG PVA ++FNCQ+E A+RRR
Sbjct:    7 EPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.518e-41
Identity = 85/174 (48.85%), Postives = 114/174 (65.52%), Query Frame = -3
Query:  261 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKH-VTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 776
            M+  ++PL+VGRVIGDV++MF PSV M V + S   V+NG ++ PS+  S P++ I G      +TL+M DPDAPSPS P MRE++HW+V DIPG T+ + G EI+ Y  P+P  GIHRY+  LF+Q+    +   P TR  FNT  F+    L  PVA +YFN Q+E A RRR
Sbjct:    1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.381e-41
Identity = 85/170 (50.00%), Postives = 116/170 (68.24%), Query Frame = -3
Query:  261 VDPLVVGRVIGDVVDMFVPSVGMSVYY-GSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 764
            V+PLVV RVIG+VVD F PSV ++V Y GSK V NG ++ P++  + P++ I G      YTL+MTDPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  P+P +GIHRY+++L++Q      V+   TR +FNTR +     LG PVA +YFN Q+E A+RRR
Sbjct:    6 VEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSG-RQTVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174          
BLAST of CX047008 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.883e-40
Identity = 87/164 (53.05%), Postives = 105/164 (64.02%), Query Frame = -3
Query:  279 DPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 761
            DPLVVG V+GDV+D F   V + V YG + VTNG D++PS   + P + I G      YTLVM DPD PSPS P  RE++HW+V DIP  T  A G E++ Y  PRPP GIHR ++VLF+Q   LG   V  P  R  FNTR FA   +LGLPVA  YFNCQ+E
Sbjct:    7 DPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQ---LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRE 167          
The following BLAST results are available for this feature:
BLAST of CX047008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MFT_ARATH5.157e-8280.35Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
CET2_TOBAC3.268e-4452.66CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
CET4_TOBAC4.268e-4453.25CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
CEN_ANTMA7.279e-4451.93Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]
CEN_ARATH8.048e-4353.22Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
TFL1_ARATH2.342e-4247.93Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
SELFP_SOLLC6.813e-4249.70Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
BFT_ARATH1.518e-4148.85Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
CET1_TOBAC3.381e-4150.00CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
TSF_ARATH4.883e-4053.05Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F01-L2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047008 ID=CX047008; Name=CX047008; organism=Citrus sinensis; type=EST; length=805bp
GGCGAATTGGGGTACCGCGGCCCCCCCACGAAAGCTTATTACAAGGGAAA
CAGCTTACATTACATGAACTTTAGCCTGATTAAACAAAGCCAACACCTAC
ATGCTAAGACTAAAACGAGACAGTACACTTGCGGGGAAAAAAAAAAGAAA
GAAAGGAAAAGGAAAACCAAAACCAAAAGAGAAACATATTAAAGACACCA
CAACTCTCTTTGTCTATTACACTTGAGCTGAGCACTAGCTAGCGCCTCCT
TGATTGTTCAACGCCTGCGGCTTGCCGGTTCCTTCTGACAGTTGAAGTAA
ATAGTGGCCACAGGGAGGCCAAGATCCAGATTCCCAGCAAAGAGCCGAGT
GTTGAAGTTAGCCCTCGTTGGTGGCTGCTCGACCAGCCCCAATGGAGCCT
TCTGCTGAAACAGCACCATTATGTATCGATGAATCCCCACCGGTGGCCGT
GGCCCCATGTACGGCAGAATCTCCATCCCTTGAGCGGGGTTAGTGCCACC
AGGAATGTCCACGACGATCCAGTGAACCCACTCCCTCATGCGTGGCTCGC
TTGGACTCGGAGCATCAGGATCAGTCATCACCAAAGTATAAAGCTCATCA
GAGTGGCCGGTTATGTTGAGTTTTGGTGGACTGGTAGCCATTGAAGGCTT
GACGTCACATCCGTTGGTGACATGCTTTGAGCCATAGTAAACAGACATGC
CAACGCTTGGGACAAACATATCGACGACGTCGCCGATGACCCTGCCGACG
ACTAGAGGATCAACTGAAGCAGCCATTGAAGCAAAGAAAAGGAAAATAAG
AACAA
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