CX046987

Overview
NameCX046987
Unique NameCX046987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12815 contig Csv1_Contig12815:65..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5G_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.174e-45
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = -2
Query:  392 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVA 745
            VAERALFLWNNDHIRNLI  N KVI+PI+FPA+ERNTRGHWNQAVQSLTLNVRK+ ++ DQ LFDECLA+FQEDE  E E   KRE+TWK LE+LAAS++VSNEAVLV +F  SV +A
Sbjct:  398 VAERALFLWNNDHIRNLITQNHKVIMPIVFPAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKLLEELAASKSVSNEAVLVPRFSSSVTLA 515          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5Z_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.449e-43
Identity = 85/123 (69.11%), Postives = 102/123 (82.93%), Query Frame = -2
Query:  380 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR-AVSNEAVLVSKFIYSVAVAPSTS 745
            VAERALFLWNNDHIRNLI  N KVI+PI+FPALERNTRGHWNQAVQSLT+NVRK+  + DQ LFDECLA+FQ +E+ + E + KRE TW+RLEDLA S+  V+NEAVLV +F+ SV +  S+S
Sbjct:  419 VAERALFLWNNDHIRNLITQNHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCEIDQVLFDECLAKFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLVPRFVSSVNLTTSSS 541          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5N_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.700e-36
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  446 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRA 745
            VAERALFLWNN+HI NLI  NRKVILPIIFPALERN + HWNQAV SLTLNVRKIF D D  LF ECLA+F+EDE K  ET+ KRE+TWKRLE+L   +A
Sbjct:  410 VAERALFLWNNNHIENLIMQNRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAKFKEDESKAAETEAKREATWKRLEELGVRKA 509          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5T_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.946e-36
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = -2
Query:  437 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSN 745
            VAERALFLWNNDHI NLI  NRKVILPIIFPALERNT+ HWNQAV SLTLNV+KIF+D D  LF +CLA+F+EDE KE E   KRE+TWKRLE++   +  S+
Sbjct:  389 VAERALFLWNNDHIENLIMQNRKVILPIIFPALERNTQKHWNQAVHSLTLNVQKIFNDIDAELFKDCLAKFREDESKEAEIGAKREATWKRLEEIGNQKQKSS 491          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5D_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.055e-30
Identity = 57/100 (57.00%), Postives = 79/100 (79.00%), Query Frame = -2
Query:  446 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRA 745
            VAERAL+LWNNDH+ NL+  N ++ILPI+FPALE+N   HWNQAV++LT NV K+ SD +  LF+ECL +FQED+ K ++T++K   TW++LE++ AS A
Sbjct:  377 VAERALYLWNNDHVTNLVRQNSRIILPIVFPALEKNGSSHWNQAVKNLTENVLKVLSDTNPDLFEECLHKFQEDQQKAEDTKKKNGETWRQLEEIVASMA 476          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5I_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.541e-29
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  398 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNE-AVLVSKFIYSVA 745
            V+ERALFLWNND I NLI  NR+ ILPI+F ALE+N + HWNQ+V +LTLNVRK+F + D+ALF  C ARF+EDE K+    EKR+  W RLE+ A+ + ++ + AVLV+    S+A
Sbjct:  383 VSERALFLWNNDQIVNLIGHNRQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLENAASMKPITGKTAVLVTPRATSIA 499          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5B_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  449 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR 745
            VAERALFLWNN+HI  LI  NR VILPII+P LE+N + HWNQAV  LT N++K+F + D  LF+EC  +++E + K KE +E+R+ TWKRL + AA R
Sbjct:  388 VAERALFLWNNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAAER 486          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5E_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.221e-26
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  446 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRA 745
            VAERALFLWNN+HI  LI  N+ VI PIIF ALERN +GHWNQAV  L+ NVR++F + D  LF+EC  ++ E+E K  E  E+RE TWKRLE+ A+  A
Sbjct:  397 VAERALFLWNNEHIVGLIAQNKDVIFPIIFEALERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEKQYLENEAKACELLEQRELTWKRLEEAASLAA 496          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5A_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  449 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR 745
            VAERALFLWNN+H+  LI  NR VILPIIF +LE+N   HWNQAV  L+ N++++F + D  LF+EC  +++E + K K+ +E+R++ W+RL++    R
Sbjct:  388 VAERALFLWNNEHVVGLIAQNRGVILPIIFASLEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRRLDEAVEER 486          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5G_MOUSE (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Mus musculus GN=Ppp2r5c PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = -2
Query:  419 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR---AVSNEAVLVS 745
            VAERAL+ WNN++I +LI+ N   ILPI+FP+L RN++ HWN+ +  L  N  K+F + +Q LFD+C  +F+ +++KEK   ++RE  W ++E+LA +    AV ++A  VS
Sbjct:  342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVYSQASAVS 453          
The following BLAST results are available for this feature:
BLAST of CX046987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
2A5G_ARATH1.174e-4574.58Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5Z_ARATH2.449e-4369.11Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5N_ARATH1.700e-3674.00Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5T_ARATH4.946e-3670.87Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5D_ARATH4.055e-3057.00Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2A5I_ARATH1.541e-2955.56Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5B_ARATH1.305e-2857.58Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5E_ARATH1.221e-2659.00Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5A_ARATH3.928e-2549.49Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5G_MOUSE9.055e-2243.75Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11D11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11D11-H22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046987 ID=CX046987; Name=CX046987; organism=Citrus sinensis; type=EST; length=746bp
CTTTTTTTAGACTAAAAGGAACATCTTTGCATTACATAAAATAAATAATT
ATCAGGTAAGAAATCCAAAGACCTGTATAAACCAAATCCCTTATCCTTAT
GATACACAAACACCTCCATGACAGGAGAGGAAGAGGGATAACAAACAATT
AAGGAATAAGCCGAGAACCCAACGAAAGGAGACACCTCAATATCCACATA
AAATCTTCACTTTAATCATTTAGCTGGTAGATTTGCATAGTAGGACCCAA
GGGAAGTGAGACCAAACAATTCCTGTATGGCACCATTTGGGTTACTCCCT
TTAACATTCCACCTTGGCTACTTAGAATAAGCTCTTCTCAATGTGCATGC
AGCTCTCAACTAATGGCAGTAGCCCGTGGGCTGGTGCTAGGGGCAACAGC
AACAGAGTAGATGAACTTTGAGACGAGCACAGCCTCATTACTTACAGCTC
TGGAGGCAGCCAAATCTTCCAAGCGTTTCCAGGTTGATTCTCGCTTCTCC
TGTGTCTCCTTCTCCTTCATTTCGTCCTCTTGGAATCTGGCCAAGCACTC
ATCAAATAGAGCTTGATCGGCATCCGAAAAAATCTTCCTGACATTCAGTG
TCAGACTTTGAACAGCTTGATTCCAGTGACCCCTTGTGTTTCTCTCCAAA
GCTGGGAAGATTATGGGCAGTATCACTTTCCGGTTTAAGTTGATCAGATT
CCTTATGTGATCATTGTTCCACAAAAACAATGCACGTTCAGCAACC
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