CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6259 contig Csv1_Contig6259:11..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP5_ARATH (ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 4.621e-100
Identity = 180/196 (91.84%), Postives = 188/196 (95.92%), Query Frame = -1
Query:  265 PYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 852
            PYFP +AQG  P  PMVQERFQS+ISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DP KDIV+YVNSPGGSVTAGMAIFDTM+HIRPDVSTVCVGLAASMGAFLLSAG KGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD+FMS KEAK+YGLIDGVIMN
Sbjct:   93 PYFPAYAQGQGPP-PMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMN 287          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_ANASP (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.092e-68
Identity = 127/176 (72.16%), Postives = 147/176 (83.52%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IFDTMKHIRPDV T+C GLAASMGAFLLSAGAKGKR SLP+SRIMIHQPLGGAQG  TDI+IQA E+L+HK  LN YLA HTGQ +E+I +DT+RD+FMSP EAKDYGLID VI
Sbjct:   14 ERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVI 189          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.023e-67
Identity = 126/176 (71.59%), Postives = 146/176 (82.95%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IFDTMKHIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG  TDI+IQA E+L+HK  LN YLA HTGQ +E+I +DT+RD+FMSP EA+DYGLID VI
Sbjct:   14 ERAFDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVI 189          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.129e-64
Identity = 120/176 (68.18%), Postives = 148/176 (84.09%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+DTM+HI+PDVST+C+GLAASMGAFLL+ GAKGKR +LP++RIMIHQPLGGAQG  TDI+IQA E+L  K +LN  LAYHTGQ LE+I +DTDRD FM+P++AK+YGLID VI
Sbjct:   13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.103e-64
Identity = 119/176 (67.61%), Postives = 147/176 (83.52%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+DTM+HI+PDVST+C+GLAASMGAFLL+ G KGKR +LP++RIMIHQPLGGAQG  TDI+IQA E+L  K +LN  LAYHTGQ LE+I +DTDRD FM+P++AK+YGLID VI
Sbjct:   13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.524e-62
Identity = 118/176 (67.05%), Postives = 145/176 (82.39%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            +R   + S+L + RI+  G  V D+ AN++VAQLL+L+A DP KDI +Y+NSPGGSV+AG+ IFDTM  IRPDV T+C+GLAASMGAFLLSAGAKGKR SLPNSRIMIHQPLGGAQG  TDI+IQA E+L+ KA LN +LA HTG+SLE+I  DT+RD+FMS +E+K+YGLID VI
Sbjct:   13 DRAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVI 188          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.520e-62
Identity = 117/176 (66.48%), Postives = 143/176 (81.25%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  VDD +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAGMAI+DTM+ + PDV+T+C GLAASMGAFLLS GA+GKR +LP++RIMIHQPLGGAQG   DI+IQA E+L+HK+ LN  LA HTGQ LEKI  DTDRD+FMSP+EAK YGLID V+
Sbjct:   49 ERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.520e-62
Identity = 117/176 (66.48%), Postives = 143/176 (81.25%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  VDD +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAGMAI+DTM+ + PDV+T+C GLAASMGAFLLS GA+GKR +LP++RIMIHQPLGGAQG   DI+IQA E+L+HK+ LN  LA HTGQ LEKI  DTDRD+FMSP+EAK YGLID V+
Sbjct:   49 ERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.113e-61
Identity = 114/176 (64.77%), Postives = 147/176 (83.52%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G A+DD++AN+IVAQLL+L++ DP KDI  Y+NSPGG VTAGMA++DTM++I+PDV+TVC+G AASMGA LL+AGAKGKR+SLPNSRIMIHQPLGGAQG  +DI IQANE+L  K  L+G L+ HTGQ+ +KI++DTDRD+FMS  +AK+YGL+D V+
Sbjct:   15 ERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVV 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMP (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.479e-61
Identity = 117/178 (65.73%), Postives = 143/178 (80.34%), Query Frame = -1
Query:  265 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 798
            ER   + S+L + RII  G  ++D +++ +VAQLL+L+A DPHKDI IY+NSPGGSVTAG+AI+DTM+ I PDV T+C G+AASMGAFLLS GAKGKR +LPNSRIMIHQPLGGAQG   +I+IQA E+L  K  LN  LA HT QSLEKIN+DT+RDYF+SP+EA +YGLID VI N
Sbjct:   36 ERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKN 213          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP5_ARATH4.621e-10091.84ATP-dependent Clp protease proteolytic subunit 5, ... [more]
CLPP1_ANASP6.092e-6872.16ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_ANAVT3.023e-6771.59ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP2_SYNJA3.129e-6468.18ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJB9.103e-6467.61ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNY36.524e-6267.05ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP3_SYNP68.520e-6266.48ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNE78.520e-6266.48ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_DESAH1.113e-6164.77ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMP2.479e-6165.73ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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