CX046953

Overview
NameCX046953
Unique NameCX046953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3011 contig Csv1_Contig3011:60..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_ARATH (Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 3.527e-85
Identity = 157/192 (81.77%), Postives = 170/192 (88.54%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQ 576
            KIRVK D+TGVET NVKMSMNPFCEIALEEALRIKE+G A EV+AVS+GP+QCVDTLRTGLAMGADRG+HVE      PLT+AKILKSL +VE P LI LGKQAIDDDCNQTGQMVA LL W Q TFASKVVLDK+K +ATV+REVDGGLETL +DLPAVITTDLRLNQPRYA+LPNIMKAKSKPIKK T Q
Sbjct:   16 KIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAGFAKEVIAVSIGPSQCVDTLRTGLAMGADRGIHVETNSIFLPLTIAKILKSLADVENPGLIFLGKQAIDDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDLRLNQPRYASLPNIMKAKSKPIKKMTVQ 207          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_ORYSJ (Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFB PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 3.908e-76
Identity = 146/196 (74.49%), Postives = 168/196 (85.71%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV----EAAGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQ 576
            K+RV+ DRTGVET +VKMSMNPFCEIA+EEALR++ESG A+EVVA ++GP+Q  DTLRT LAMGADR VHV    + +  L PL VAKIL++L   E P L+ILGKQAIDDDCNQTGQM+AGLL+W QGTFASKV+L+KEK  ATVEREVDGG+ET+ LDLPAVITTDLRLNQPRYATLPNIMKAKSK IKK TP+
Sbjct:   16 KVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGAATEVVAATVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEK--ATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPE 209          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_ORYSI (Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. indica GN=ETFB PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.706e-76
Identity = 145/196 (73.98%), Postives = 168/196 (85.71%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV----EAAGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQ 576
            K+RV+ DRTGVET +VKMSMNPFCEIA+EEALR++E+G A+EVVA ++GP+Q  DTLRT LAMGADR VHV    + +  L PL VAKIL++L   E P L+ILGKQAIDDDCNQTGQM+AGLL+W QGTFASKV+L+KEK  ATVEREVDGG+ET+ LDLPAVITTDLRLNQPRYATLPNIMKAKSK IKK TP+
Sbjct:   16 KVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLREAGAATEVVAATVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEK--ATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPE 209          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_PONAB (Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 2.539e-67
Identity = 132/195 (67.69%), Postives = 152/195 (77.95%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTP 573
            KIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L W QGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+   P
Sbjct:   19 KIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP 211          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_HUMAN (Electron transfer flavoprotein subunit beta OS=Homo sapiens GN=ETFB PE=1 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 2.539e-67
Identity = 132/195 (67.69%), Postives = 152/195 (77.95%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTP 573
            KIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L W QGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+   P
Sbjct:   19 KIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP 211          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_BOVIN (Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB PE=2 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.260e-66
Identity = 129/191 (67.54%), Postives = 150/191 (78.53%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 561
            KIRVK D+TGV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GPAQC +T+RT LAMGADRG+HVE     A  L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L W QGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+
Sbjct:   19 KIRVKPDKTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPAQCQETIRTALAMGADRGIHVEVPAAEANHLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--IKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIE 207          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_MOUSE (Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 4.788e-66
Identity = 128/191 (67.02%), Postives = 150/191 (78.53%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 561
            KIRVK D++GV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GP+QC +T+RT LAMGADRG+HVE  G     L PL VA++L  L E EK  L+ LGKQAIDDDCNQTGQM AGLL W QGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+
Sbjct:   19 KIRVKPDKSGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPSQCQETIRTALAMGADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDK--VKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIE 207          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_PIG (Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB PE=2 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 6.254e-66
Identity = 129/191 (67.54%), Postives = 149/191 (78.01%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 561
            KIRVK DRTGV  + VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A  L PL VA++L  L + EK  L++LGKQAIDDDCNQTGQM AG L W QGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+
Sbjct:   19 KIRVKPDRTGVVMDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPAAEAHHLGPLQVARVLAKLAQKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--VKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIE 207          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_DICDI (Electron transfer flavoprotein subunit beta OS=Dictyostelium discoideum GN=etfb PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.168e-66
Identity = 126/192 (65.62%), Postives = 152/192 (79.17%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQ 576
            KIRVK D++GVET NVKMSMNPF EIA+EEA+RIKE  LA E++AVSMGP    +T+RT +AMGAD+G+HVE   +L PL+VAK+LK LV+ EKP LIILGKQAIDDDCNQT QM+AGLL+W Q TFASKV  D +     V RE+DGGLETL + LPA+I+ DLRLN+PRYA L NIMK+K   +K  TP+
Sbjct:   18 KIRVKGDKSGVETANVKMSMNPFDEIAVEEAIRIKEKNLAKEIIAVSMGPKTSQETIRTAIAMGADKGIHVETTAELQPLSVAKLLKELVDKEKPNLIILGKQAIDDDCNQTAQMLAGLLNWPQATFASKV--DIKDDSVHVTREIDGGLETLSMKLPAIISCDLRLNEPRYAKLQNIMKSKKAELKVETPE 207          
BLAST of CX046953 vs. ExPASy Swiss-Prot
Match: ETFB_RAT (Electron transfer flavoprotein subunit beta OS=Rattus norvegicus GN=Etfb PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.067e-65
Identity = 127/191 (66.49%), Postives = 149/191 (78.01%), Query Frame = 1
Query:    1 KIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPALIILGKQAIDDDCNQTGQMVAGLLSWAQGTFASKVVLDKEKQLATVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 561
            KIRVK D++GV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GP QC +T+RT LAMGADRG+HVE  G     L PL VA++L  L E EK  L+ LGKQAIDDDCNQTGQM AGLL W QGTFAS+V L+ +K    VERE+DGGLET+ L LPAV+T DLRLN+PRYATLPNIMKAK K I+
Sbjct:   19 KIRVKPDKSGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPPQCQETIRTALAMGADRGIHVEVPGAEAENLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDK--VKVEREIDGGLETIRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIE 207          
The following BLAST results are available for this feature:
BLAST of CX046953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ETFB_ARATH3.527e-8581.77Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_ORYSJ3.908e-7674.49Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_ORYSI8.706e-7673.98Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_PONAB2.539e-6767.69Electron transfer flavoprotein subunit beta OS=Pon... [more]
ETFB_HUMAN2.539e-6767.69Electron transfer flavoprotein subunit beta OS=Hom... [more]
ETFB_BOVIN1.260e-6667.54Electron transfer flavoprotein subunit beta OS=Bos... [more]
ETFB_MOUSE4.788e-6667.02Electron transfer flavoprotein subunit beta OS=Mus... [more]
ETFB_PIG6.254e-6667.54Electron transfer flavoprotein subunit beta OS=Sus... [more]
ETFB_DICDI8.168e-6665.63Electron transfer flavoprotein subunit beta OS=Dic... [more]
ETFB_RAT1.067e-6566.49Electron transfer flavoprotein subunit beta OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C01-F2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046953 ID=CX046953; Name=CX046953; organism=Citrus sinensis; type=EST; length=577bp
AAGATCAGGGTGAAATCCGACAGGACAGGAGTGGAGACAAACAACGTTAA
GATGTCGATGAACCCCTTTTGCGAGATAGCGCTGGAGGAGGCTCTGAGGA
TCAAGGAATCTGGATTGGCTTCCGAGGTTGTCGCTGTCAGCATGGGCCCC
GCCCAGTGCGTTGATACTCTACGGACGGGTTTAGCTATGGGCGCTGATAG
AGGAGTCCACGTGGAGGCTGCCGGTCAGCTGTATCCTTTGACTGTTGCCA
AGATTTTGAAGAGCCTTGTTGAGGTTGAGAAGCCTGCCTTGATTATTCTG
GGAAAGCAGGCAATTGATGATGACTGCAATCAAACAGGGCAAATGGTTGC
AGGGCTACTCAGCTGGGCGCAGGGAACCTTTGCTTCTAAGGTTGTGCTGG
ATAAGGAAAAACAATTAGCAACGGTGGAGAGAGAAGTAGATGGTGGTCTT
GAGACTTTAGAATTGGATTTACCAGCTGTAATCACCACTGATTTGAGACT
CAACCAACCGAGGTACGCAACACTCCCCAACATAATGAAGGCAAAATCGA
AACCCATAAAGAAATATACTCCCCAGG
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