CX046928

Overview
NameCX046928
Unique NameCX046928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046928_ssr417 microsatellite CX046928_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGB_GOSHI (Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.438e-51
Identity = 102/214 (47.66%), Postives = 130/214 (60.75%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRR---------AGNLFRGFDERLLAEAFNVNPDL 780
            C +QNLNAL+P+ +  SEAG TEFWDQN +Q QCA VA  RH+IQ++GLL+P++T+ P +FYV QG GIHG VFPGC ET                     +R+L+EGD++ALP G AHWI+NNGR QLVLVALVDVGN  NQLD+ FRKF+L G+PQ  +                    R           N+  GF + LLA+AF ++  L
Sbjct:   50 CQLQNLNALQPKHRFRSEAGETEFWDQNEDQFQCAGVAFLRHKIQRKGLLLPSFTSAPMLFYVEQGEGIHGAVFPGCPET-YQSQSQQNIQDRPQRDQHQKLRRLKEGDVVALPAGVAHWIFNNGRSQLVLVALVDVGNDANQLDENFRKFFLAGSPQGGVVRGGQSRDRNQRQSRTQRGEREEEESQESGGNNVLSGFRDNLLAQAFGIDTRL 262          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: 11SB_CUCMA (11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.601e-40
Identity = 83/236 (35.17%), Postives = 122/236 (51.69%), Query Frame = 1
Query:   76 NICFAQIEHVTGITSEG-KXXXXXXXXXXXXCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVNPDL 780
            N C +QIE  +    +G +            C ++NL A +P ++ E+EA  TE WDQ+N++ QCA V + RH I+ +GLL+P ++N P++ +V QG GI G+  PGCAET                     +R  REGD++ +P G +HW+YN G+  LVL+   D  N  NQ+D Y RKFYL G P+                       ++GN+F GF +  L EAF ++  L
Sbjct:   17 NGCLSQIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAIFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE---QVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGL 249          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGA_GOSHI (Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.083e-40
Identity = 74/160 (46.25%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 645
            C I  L A  P+ ++ SEAG TE+W+ N +QL+CA V+V R  I+  GL++P++TN P++ Y+VQGRGI G+V PGCAET                     VR+ R+GDIIALP G  HW YN+G +++V + L+D GNS NQLD   R+F+L GNP+ +
Sbjct:   34 CQINRLRASAPQTRIRSEAGTTEWWNPNCQQLRCAGVSVMRQTIEPNGLVLPSFTNAPQLLYIVQGRGIQGIVMPGCAETFQDSQQWQHQSRGRFQDQHQKVRRFRQGDIIALPQGVVHWSYNDGNERVVTINLLDTGNSANQLDNIPRRFHLAGNPEEE 193          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGA2_PEA (Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.124e-36
Identity = 77/202 (38.12%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVN 771
            C ++ LNALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q   L  P Y+N P+  ++ QG G  G+VFPGC ET                     V + REGDIIA+PTG   W+YN+    ++ V+L D+ +S NQLDQ  R+FYL GN + +                   +    N+F GF    L +AFNVN
Sbjct:   32 CQLERLNALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQHNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEF-----LRYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVN 228          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGA_PEA (Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.187e-35
Identity = 76/202 (37.62%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVN 771
            C ++ L+ALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q+  L  P Y+N P+  ++ QG G  G+VFPGC ET                     V + REGDIIA+PTG   W+YN+    ++ V+L D+ +S NQLDQ  R+FYL GN + +                   +    N+F GF    L +AFNVN
Sbjct:   31 CQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEF-----LQYQHQQGGKQEQENEGNNIFSGFKRDYLEDAFNVN 227          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: GLUB2_ORYSJ (Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.313e-34
Identity = 77/206 (37.38%), Postives = 104/206 (50.49%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVN 771
            C    L A EP +KV SEAGVTE++D+ NE  QC    V R  IQ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T                         + Q R+GD++ALP G AHW YN+G   +V + + D+ NS NQL+   ++F L GN                      +   + N+F GF   LL+EA  +N
Sbjct:   45 CRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDASVVAIYVYDINNSANQLEPRQKEFLLAGN----------NNRVQQVYGSSIEQHSSQNIFNGFGTELLSEALGIN 240          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGJ_PEA (Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34
Identity = 67/162 (41.36%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--XXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 645
            C + ++NALEP  +VESEAG+TE W+ N+ +L+CA V++ R  I   GL +P+++ +P++ +++QG+G+ G+ FPGC ET                       VR+ R+GDIIA+P+G  +W YN+G + LV ++L+D  N  NQLD   R FYLGGNP+ +
Sbjct:   33 CQLDSINALEPDHRVESEAGLTETWNPNHPELKCAGVSLIRRTIDPNGLHLPSFSPSPQLIFIIQGKGVLGLSFPGCPETYEEPRSSQSRQESRQQQGDSHQKVRRFRKGDIIAIPSGIPYWTYNHGDEPLVAISLLDTSNIANQLDSTPRVFYLGGNPETE 194          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34
Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--XXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ 639
            C + N+NALEP  +VESEAG+TE W+ N+ +L+CA V++ R  I   GL +P+Y+ +P++ Y++QG+G+ G+  PGC +T                       +R+ R+GDIIA+P+G  +W YNNG + LV ++L+D  N  NQLD   R FYL GNP+
Sbjct:   33 CRLDNINALEPDHRVESEAGLTETWNPNHPELRCAGVSLIRRTIDPNGLHLPSYSPSPQLIYIIQGKGVIGLTLPGCPQTYQEPRSSQSRQGSRQQQPDSHQKIRRFRKGDIIAIPSGIPYWTYNNGDEPLVAISLLDTSNIANQLDSTPRVFYLVGNPE 192          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: GLYG2_SOYBN (Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34
Identity = 77/206 (37.38%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-XXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQL---XXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVN 771
            C IQ LNAL+P  ++ESE G  E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG GI G++FPGC  T                      V + REGD+IA+PTG A W+YNN    +V V+++D  + +NQLDQ  R+FYL GN + +                     ++    N+  GF    L EAF VN
Sbjct:   28 CQIQKLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGNGIFGMIFPGCPSTYQEPQESQQRGRSQRPQDRHQKVHRFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQQQQGGSQSQKGKQQEEENEGSNILSGFAPEFLKEAFGVN 233          
BLAST of CX046928 vs. ExPASy Swiss-Prot
Match: GLUB5_ORYSJ (Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34
Identity = 77/206 (37.38%), Postives = 105/206 (50.97%), Query Frame = 1
Query:  166 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXXXXVRQLREGDIIALPTGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXDDRRAGNLFRGFDERLLAEAFNVN 771
            C    L A EP ++V SEAGVTE++D+ NEQ QC    V R  I+ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T                         + Q R+GDI+ALP G AHW YN G   +V + + D+ N+ NQL+   ++F L GN   +                  +     N+F GF+  LL+EA  VN
Sbjct:   45 CRFDRLQAFEPLRRVRSEAGVTEYFDEKNEQFQCTGTFVIRRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPATYQQQFQQFLPEGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQLEPRQKEFLLAGNNNRE----------QQMYGRSIEQHSGQNIFSGFNNELLSEALGVN 240          
The following BLAST results are available for this feature:
BLAST of CX046928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LEGB_GOSHI3.438e-5147.66Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1[more]
11SB_CUCMA1.601e-4035.1711S globulin subunit beta OS=Cucurbita maxima PE=1... [more]
LEGA_GOSHI6.083e-4046.25Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2[more]
LEGA2_PEA3.124e-3638.12Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1[more]
LEGA_PEA1.187e-3537.62Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1[more]
GLUB2_ORYSJ1.313e-3437.38Glutelin type-B 2 OS=Oryza sativa subsp. japonica ... [more]
LEGJ_PEA2.924e-3441.36Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1[more]
LEGB4_VICFA2.924e-3441.88Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]
GLYG2_SOYBN2.924e-3437.38Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2[more]
GLUB5_ORYSJ3.819e-3437.38Glutelin type-B 5 OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A12-B24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046928 ID=CX046928; Name=CX046928; organism=Citrus sinensis; type=EST; length=782bp
AAAACAATTTTGGGCTTTTTTCTCAAAATGGCTTCTTCTTTGCTCTGTTT
TGGCCTTTGCTTTCTAGTTCTCTTCAACATCTGCTTTGCTCAAATAGAGC
ATGTAACAGGCATAACTAGTGAAGGAAAGCAGCAAAGGCAACGGCAGCAA
CGCTTCCAAACCCAGTGCAATATCCAGAACCTCAACGCCCTTGAGCCCCG
ACAGAAGGTCGAATCCGAAGCTGGCGTCACAGAGTTCTGGGACCAGAACA
ATGAGCAATTACAGTGCGCCAATGTTGCCGTATTTCGCCACCGTATCCAG
CAGAGAGGGCTGCTCGTGCCTGCGTACACCAACACTCCTGAGATTTTCTA
TGTTGTTCAAGGTAGAGGCATTCATGGAGTTGTATTCCCCGGATGTGCTG
AGACTTTCCAAGATTCACAACAACAACAGTCGTTCCAGAGCAGTAAATCC
CAAGATCAACACCAAAAGGTCAGACAACTACGTGAGGGTGATATCATTGC
ATTGCCAACTGGAGCAGCTCACTGGATTTACAACAATGGCCGGGACCAGC
TTGTTTTGGTCGCCCTCGTTGACGTTGGCAATTCTCAAAACCAGCTTGAT
CAGTACTTCAGGAAATTCTACCTCGGTGGCAACCCACAACCACAACTCCA
AGGTTTCAGTCAAAGTCAAGGTGGCAGAAGTCAGGGAAGCCAAGGCAGCG
ACGACAGGAGAGCTGGCAATCTCTTTAGAGGCTTTGACGAGCGGTTGTTG
GCTGAGGCCTTCAACGTGAACCCAGATCTAAT
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