CX046925

Overview
NameCX046925
Unique NameCX046925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3955 contig Csv1_Contig3955:13..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 52/100 (52.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  206 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPM-----SDGKKGV-HVATPHPSKGVKTP----NAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 475
            TPKKPE GKKR                        + GKKG  HVATPHP+KG KTP        ++PKSGG V C SCSKTFNSE ALQ+H+KAKH AK
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAKG-KTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK 303          
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  206 SDGKKGVHVATPHPSK-GVKTPNA-KAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 385
            +DGKK VHVATPHPSK G KTPN+ K QTP S GQ+SC+SC K+F +E  LQ H KAKH  +
Sbjct:  234 TDGKKSVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ 295          
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = -1
Query:  209 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMSD------GKKG--VHVATPHPSKGV------KTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSA 475
            TPKKPEVGKKR                   +       GKKG  VHVATPHP+KG       K+  +    PKSGG V C  CSK+F SE ALQ+H++AK  A
Sbjct:  199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAKGKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301          
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 46/103 (44.66%), Postives = 52/103 (50.49%), Query Frame = -1
Query:  209 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMS----DGKKG-VHVATPHPSK---------GVKTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSA 475
            TPKKPE  KKR                  ++    D KK  VHVATPHPSK              + + QTPKS G   C SC++TF SE  LQSHTKAKHSA
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 292          
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 47/104 (45.19%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  206 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMSD------GKKG--VHVATPHPSKGV------KTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 475
            TPKKPEVGKKR                   +       GKKG  VHVATPHP+KG       K+  +    PKSG  V C SCSK+F SE A Q+H+KAKH  K
Sbjct:  199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAKGKTIVNNDKSVKSPKSAPKSG--VPCKSCSKSFISETAPQAHSKAKHGGK 300          
The following BLAST results are available for this feature:
BLAST of CX046925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HDT2_MAIZE1.416e-1652.00Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_SOYBN3.487e-1564.52Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE9.495e-1344.66Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_ARATH2.763e-1244.66Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT3_MAIZE6.155e-1245.19Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11A11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A11-B22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046925 ID=CX046925; Name=CX046925; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTAGTTTAAATATAAATTCACTAAAAGCAAGACAT
CCATAACAATAGTAGAAAGCGCTGCAGTACTAGCTCATTCACTTTCTGTC
AAAAGCCTAACATAAACATTAACACATAGCTCTCCATATGTGCTCGCAAA
AATAAACATGCCACAGCAACCGGCAGCAGAGCATGTTATAACATGAACCC
CTCTATTTTGCAGAATGCTTAGCCTTTGTATGAGACTGTAGAGCATTCTC
GGAGTTAAATGTCTTGCTGCAGGATGAACATGAGACTTGTCCCCCAGATT
TCGGAGTCTGTGCCTTCGCATTAGGTGTTTTTACACCCTTTGACGGATGA
GGAGTAGCAACATGAACTCCCTTCTTACCATCAGACATGGGAGTTTTTGC
CTTCTTTGCAGGAGCGGGAGTTTTTGTTGCAGATTCAGTGGGTCTCTTCT
TCCCTACTTCAGGCTTCTTAGGTGTCTCCTCATCTTCATCTGAGTCTTCA
TCATCTTCTGAATCATCCTCATCGTCATCGTCAGAATCATCCTCACCAGA
AATCGCATCAGAATCATCTCCATCAACCATCTCATCATCTGAATCATCTG
ATTCATCGTCACCATCTTCTTCAGGTTTCACATCCTTAATTGGCTTTGCA
GGCTTAGCAGCCAGGTTAGCCTTGGGAGTAGCCACCTTTGCTTTCTCAGC
CTTTTGCCCAGCTTTTCCGTTCTCTGCTACAGCAGTAATGGAAGGAAGCT
CCTCTTGCTCTTCTTCATCAGAGTCCCCCATATCAAATTCATCTGAACTA
TCCATAGGCAAAGGGGTCTGGTAACCACAAAAGTAGATACTCCCGTTCTT
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