CX046925
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16 Identity = 52/100 (52.00%), Postives = 58/100 (58.00%), Query Frame = -1 Query: 206 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPM-----SDGKKGV-HVATPHPSKGVKTP----NAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 475 TPKKPE GKKR + GKKG HVATPHP+KG KTP ++PKSGG V C SCSKTFNSE ALQ+H+KAKH AK Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAKG-KTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK 303
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15 Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 206 SDGKKGVHVATPHPSK-GVKTPNA-KAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 385 +DGKK VHVATPHPSK G KTPN+ K QTP S GQ+SC+SC K+F +E LQ H KAKH + Sbjct: 234 TDGKKSVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ 295
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13 Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = -1 Query: 209 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMSD------GKKG--VHVATPHPSKGV------KTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSA 475 TPKKPEVGKKR + GKKG VHVATPHP+KG K+ + PKSGG V C CSK+F SE ALQ+H++AK A Sbjct: 199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAKGKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12 Identity = 46/103 (44.66%), Postives = 52/103 (50.49%), Query Frame = -1 Query: 209 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMS----DGKKG-VHVATPHPSK---------GVKTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSA 475 TPKKPE KKR ++ D KK VHVATPHPSK + + QTPKS G C SC++TF SE LQSHTKAKHSA Sbjct: 190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 292
BLAST of CX046925 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12 Identity = 47/104 (45.19%), Postives = 54/104 (51.92%), Query Frame = -1 Query: 206 TPKKPEVGKKRXXXXXXXXXXXXXXXXXPMSD------GKKG--VHVATPHPSKGV------KTPNAKAQTPKSGGQVSCSSCSKTFNSENALQSHTKAKHSAK 475 TPKKPEVGKKR + GKKG VHVATPHP+KG K+ + PKSG V C SCSK+F SE A Q+H+KAKH K Sbjct: 199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAKGKTIVNNDKSVKSPKSAPKSG--VPCKSCSKSFISETAPQAHSKAKHGGK 300 The following BLAST results are available for this feature:
BLAST of CX046925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046925 ID=CX046925; Name=CX046925; organism=Citrus sinensis; type=EST; length=850bpback to top |