CX046924

Overview
NameCX046924
Unique NameCX046924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046924_ssr8 microsatellite CX046924_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046924_ssr682 microsatellite CX046924_ssr682:682..696. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3972 contig Csv1_Contig3972:22..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.435e-49
Identity = 99/151 (65.56%), Postives = 114/151 (75.50%), Query Frame = 1
Query:   76 GRRSNVFDPFSLDIWDPFEGF---SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            GRRSNVFDPFS D+WDPFEGF   SS++AN  S+AR+ +AF N R+DWKETPEAHVFKADLPGL          D  VLQISGERS+E EEKNDKWHRVER+SGKFMRRFRLPENAKM++++A+MENGVL               +IDISG
Sbjct:   10 GRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.586e-48
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F  GRRSNVFDPFSLD+WDPF+ F    ++     +ET+AF NT IDWKETP+AHVFKADLPGL          +G+VLQISGER++E+EEKNDKWHRVERSSGKF+RRFRLPENAK+D+++A+M NGV+               AIDISG
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.706e-48
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F  GRRSNVFDPFSLD+WDPF+ F  + + + +S  RE SAF +TR+DWKETPEAHVFKADLPG+          D RVLQISGERS E+E+KND+WHR+ERSSGKFMRRFRLPENAKMDQ++A+MENGVL                IDISG
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.027e-48
Identity = 95/155 (61.29%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGF----SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F  GRR+NVFDPFSLD+WDPF+ F    + S A+ P  +RE SAF +TR+DWKETPEAHVFKAD+PGL          D +VLQISGER+ E+E+KND WHRVERSSGKFMRRFRLPENAK++Q++ASMENGVL               AI+ISG
Sbjct:    7 FFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.872e-48
Identity = 92/133 (69.17%), Postives = 110/133 (82.71%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLD-IWDPFEGFSSSVANIPSS--ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            F++GRRSN+FDPFSLD IWDPF G  S+++ +P S  A ET+AFAN RIDWKETPEAHVFKADLPG+          DG VL+ISG+R+RE+EEKND WHRVERSSG+FMR+FRLPENAK+DQ++A MENGVL
Sbjct:    9 FNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47
Identity = 96/150 (64.00%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   76 GRRSNVFDPFSLDIWDPFEGF--SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            GRR+NVFDPFSLD++DPFEGF   S +AN P  A + +AF N ++DW+ETPEAHVFKADLPGL          DG +LQISGERS E EEKNDKWHRVERSSGKF RRFRLPENAKM++I+ASMENGVL               +IDISG
Sbjct:   10 GRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.290e-47
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F SGRRSNVFDPFSLD+WDP + F  S ++  +S  RE  AF +TR+DWKETPEAHVFKADLPGL          D RVLQISGERS E+E+KND+WHRVERSSGKF+RRFRLPENAKMD+++ASMENGVL               +I+ISG
Sbjct:    7 FFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.907e-47
Identity = 91/152 (59.87%), Postives = 111/152 (73.03%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGF-SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F  GRR+NVFDPFSLD+WDPFEGF +  + N P  A++ +AF N ++DW+ETPEAHVFKAD+PGL          DG +LQISGERS E EEK+D WHRVERSSGKFMRRFRLPENAK+++++ASMENGVL               ++DISG
Sbjct:    7 FFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.703e-47
Identity = 96/152 (63.16%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F  GRRS+VFDPFSLD+WDPF+ F       PSS + E SAF +TR+DWKETPEAHVFKAD+PGL          DGRVLQISGER+ E+E+KND WHRVERSSGK +RRFRLPENAK+DQ++ASMENGVL               AIDISG
Sbjct:    7 FFGGRRSSVFDPFSLDVWDPFKDFP-----FPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.532e-46
Identity = 97/157 (61.78%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   79 RRSNVFDPFSLDIWDPFEGF------SSSVANIPSSAR----ETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            RRSNVFDPFSLD+WDPF+GF      SSS +  PS  R    ET+AFA  RIDWKETPEAHVFKAD+PGL          DG +LQISGER++EQEEK D+WHRVERSSGKF+RRFRLP+NAK +QI+ASMENGVL               +I ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
The following BLAST results are available for this feature:
BLAST of CX046924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS181_ARATH1.435e-4965.5618.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA1.586e-4860.9317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_MEDSA2.706e-4863.1618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP16_SOYBN6.027e-4861.2918.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU7.872e-4869.1718.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17C_ARATH1.028e-4764.0017.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_PEA2.290e-4763.1618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP17_ARATH3.907e-4759.8717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOYBN8.703e-4763.1617.3 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ2.532e-4661.7817.9 kDa class I heat shock protein OS=Oryza sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A10-B20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046924 ID=CX046924; Name=CX046924; organism=Citrus sinensis; type=EST; length=777bp
CATTAGTACACACACACAGAAACAGAAGCAAACATAGTGAAACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTTGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGCGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGCAAGTTCATGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGGCTGAGGTTGAGCCCGAGGCCGAGAAGCAAGTT
ATTATACAAAATGATATATCATCTACATATACATCCATGCACATGGCTTT
TTGGCCTTTTGATCAGTTTTCTCTTCTGTCTGAATAATAATATTAATAAT
AGTAAATAAGATTGTAGTGTAGTGTTGTCTACTTGTCTTGTCTTGTTTTT
GTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTGTATTATACATGA
AGTTATAAAATGTTTGTTGTAAATTAA
back to top