CX046922

Overview
NameCX046922
Unique NameCX046922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046922_ssr661 microsatellite CX046922_ssr661:661..672. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4724 contig Csv1_Contig4724:55..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046922 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.567e-46
Identity = 101/165 (61.21%), Postives = 119/165 (72.12%), Query Frame = 3
Query:  315 SKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSS--PLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 803
            SK +LF     + H     S  P S  G   +K     L+L S  PL S F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL
Sbjct:    6 SKTSLFLGACGNHHRVDDFSFSPVSFGGF-GLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSL 166          
BLAST of CX046922 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  375 VFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 803
            + PKS +  C +  R  +    SP T     +G +    K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL +AGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C SL
Sbjct:   27 ISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSL 162          
BLAST of CX046922 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  333 SYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 803
            S F+Q+  +KS +S F        S+ L+   +      ++DF         N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  LV+SL +AGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+VN EE ++MC+ L
Sbjct:   17 SPFSQENQSKSKLSPF-------MSLDLKEHPMA-----SADF--------TNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGL 154          
BLAST of CX046922 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.751e-19
Identity = 49/158 (31.01%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  330 FSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 803
            FS +        S  +  +    SC+      +   SS LT+      +VF           +   S+  Q      +  +WWE+   PNM ++ SA+  + +L  AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+VN++E+KS+C SL
Sbjct:   13 FSLYASSNSTPISTPIEARQLLSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSR--------NQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSL 162          
BLAST of CX046922 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.882e-16
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  438 SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 803
            SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM ++ S ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+K MC SL
Sbjct:   52 SSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSL 172          
The following BLAST results are available for this feature:
BLAST of CX046922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH1.567e-4661.21Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH5.586e-3653.85Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH4.287e-2843.67Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH4.751e-1931.01Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH2.882e-1634.43Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11A09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A09-B18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046922 ID=CX046922; Name=CX046922; organism=Citrus sinensis; type=EST; length=803bp
GAATCTGTTTCCATTCTGCTTCTGGGTTTTTCTTTGAAACTGGTTTCATT
GGCTTCGGAAGGAGAACAAAAATTTTGATTTTTTTTTTTTTCGCGGTCGA
CGAAGTCAAAAATTACATCTTTGTACAAAACGTGTTTCGTTGGCGTTTGA
AACCGTTTTCTTCGTTTTCAGAAAGCAGTTTGTTGTGGTCAAAGCAATAA
GAACTCAAGTTTCGGTTTTATCTTTCCTGGGTATTATTATTAATAAAATC
TGTTTTCTTTATTTTCGGAGGCTAGCAAGAAAATTTGTTGTGAGAAAACA
TGGCGGAGTTGTTGAGCAAAGCGAATCTGTTTTCATATTTTAATCAAGAT
CAACACAATAAGAGCAGCATATCTGTGTTTCCAAAAAGCTGTGCTGGGTC
GTGCTCAATGAAATTGAGATCCCAGGCTCTGAGGCTCTCTTCACCACTAA
CCAGTGATTTTCATGGACATGGAGTTGTTTTTCAAGAAAATAAAGCCATC
CCCAAGAGAGGAAGCTCATCCAAGTTCTCCATTAGTGCACAGACTGGCCT
TAGAATTGGGAAGGCACAAAGGTGGTGGGAAAAGGGGCTGCAACCAAACA
TGAGAGAGGTGGCTTCTGCACAAGATTTGGTGGAATCCCTTTGGCATGCT
GGGGATAAACTTGTTGTTGTTGATTTCTTCTCCCCTGGCTGTGGTGGATG
CAAAGCTCTCCATCCCAAGATATGTCAATTGGCAGAGATGAACCCAGATG
TGCAGTTTCTTCAGGTTAATTATGAGGAGCACAAATCCATGTGTTATAGC
CTT
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