CX046916

Overview
NameCX046916
Unique NameCX046916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046916_ssr489 microsatellite CX046916_ssr489:489..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3816 contig Csv1_Contig3816:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.871e-72
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = -2
Query:  284 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 847
            WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE LG  GS++Y  F+      SPRS L CCWS
Sbjct:  163 WHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.611e-71
Identity = 124/188 (65.96%), Postives = 151/188 (80.32%), Query Frame = -2
Query:  284 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 847
            WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP SEICDF+F+PCGYSMN++EG A+S IHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE L   GS++Y  F+      SPRS L CCWS
Sbjct:  163 WHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEGGAISPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.287e-67
Identity = 126/187 (67.38%), Postives = 142/187 (75.94%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSAS  +    +P YTLEMCMTGLDR++ASVFYK+  SSAA+MT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+          L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW
Sbjct:  163 WHVYSASVGSEQSSDPTYTLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLEQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCW 349          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.902e-67
Identity = 125/187 (66.84%), Postives = 148/187 (79.14%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSASA +    +PVYTLEMCMTGLDR++ASVFYKT ESSAA MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  165 WHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 351          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.135e-66
Identity = 123/187 (65.78%), Postives = 145/187 (77.54%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F++     SP+S+LK CW
Sbjct:  165 WHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATKLLERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKTPYCASPKSVLKGCW 351          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.936e-66
Identity = 124/187 (66.31%), Postives = 144/187 (77.01%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  165 WHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.936e-66
Identity = 124/187 (66.31%), Postives = 144/187 (77.01%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  165 WHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.529e-66
Identity = 124/187 (66.31%), Postives = 144/187 (77.01%), Query Frame = -2
Query:  287 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 847
            WHVYSASA      +PVYTLEMCM GLDR++ASVFYKT ESSAA MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  163 WHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPYCESPKSVLKGCW 349          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.037e-64
Identity = 126/195 (64.62%), Postives = 155/195 (79.49%), Query Frame = -2
Query:  284 WHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALH--SDIVGDEHGDTFMLDLKGYSCGEKIYEEL-GNNGSLIYYSFSRADCST-SPRSILKCCWS 847
            WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH   ++V D + +   +++KGY+  E  +E L G  GS++YY F+R   S  SPRS L  CWS
Sbjct:  160 WHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGNENVVKDLNLENNDVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWS 354          
BLAST of CX046916 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.893e-62
Identity = 114/185 (61.62%), Postives = 139/185 (75.14%), Query Frame = -2
Query:  293 WHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKC 847
            WHVY ASA++ S  + VYTLEMCMTGLDR++ASVF+K    SAA MT +SGIRKILP SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D          +LD+KGY C EK ++ LG +GS++Y  F +A    SPRS LKC
Sbjct:  161 WHVYCASADSVSPADSVYTLEMCMTGLDREKASVFFKQQTGSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGPAVSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVKASDCGSPRSTLKC 345          
The following BLAST results are available for this feature:
BLAST of CX046916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_IPONI6.871e-7265.96S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA2.611e-7165.96S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_CATRO2.287e-6767.38S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLTU3.902e-6766.84S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST1.135e-6665.78S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_TOBAC1.936e-6666.31S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY1.936e-6666.31S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLCI2.529e-6666.31S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_HELAN4.037e-6464.62S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM_VICFA2.893e-6261.62S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A05-B10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046916 ID=CX046916; Name=CX046916; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTATGATATAATAATATGACTCTTATTATAAAAGAAGATACTGGT
TTAACATCTACATCTCCGGAAATCCAACATAACAGAAATCCAAAAACATA
AGACCTTGTTCACAATAACAGGAAAAATGCAGCAAAACGGAAAGGTAAAG
GCTGCTCAAGCCCTACCATTACATAACCCCACCACATTTTATTATATAAG
CGAAGGATTAAAATGAAAAAAACAAACACGATATTATATCCGGGACACTA
TTTCCCTTCAACTTCCTCGTCCTTCTCGTCCTCGCTCCAACAGCATTTCA
AGATTGACCTAGGAGATGTGGAGCAATCAGCCCTCGAAAAGCTGTAGTAG
ATCAGCGAACCATTATTACCGAGCTCTTCATATATCTTTTCTCCACAGGA
ATATCCCTTCAAGTCCAGCATGAAGGTGTCTCCATGTTCATCGCCAACAA
TGTCAGAATGCAGAGCAACAGAAAACTCAGCGGGTTTGAAGCAAGCAAGC
ACCCTCTCAAGCAAGGGAGTCAACTTCACAACCTCAAAATCATAACCCAC
AGCCTCAAAACTTGCATAACTGAAACCATCTTCAGGTGTGACGTGGATAG
TAGATACTGCATCCCCTTCAATACTATTCATGGAGTAACCACAAGGGTCA
AACTCAAAATCACAAATCTCAGATTTTGGAAGAATCTTTCTGATGCCAGA
GTCCTCGGTCATCATAGCGGCTGAGCTTTCATTAGTTTTGTAGAAGACAG
ATGCCCTCTTTCTGTCCAAACCAGTCATGCACATCTCTAGAGTGTAAACT
GGGTTTACATGGCTTCCTGCTTCAGCAGAGGCAGAGTAAACATGCCAT
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