CX046913

Overview
NameCX046913
Unique NameCX046913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3814 contig Csv1_Contig3814:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046913 vs. ExPASy Swiss-Prot
Match: LEA34_GOSHI (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.960e-58
Identity = 127/242 (52.48%), Postives = 157/242 (64.88%), Query Frame = 3 
Query:   63 IKYDDVFNVSGGLASKAVAPQDAAMMQSAETAAFGSTQPGGQAEVMRSTARINERAGLVSRGDA---AADQGVTITGTEIPAGRIITESLDXXXXXXXXXXAAEATTQ-----QGAITVGQALEATMQTIGDKPVELSDAAAIREAEMRATGSNIVTXXXXXXXXXXXXXXNTGMIGDEDKIKLRDVLAGASAALPA-KVVTRQDAEAVVNAERRNSPQLTTHPGGVAESMETAATLNENIN 761
            IKY DVFNVSG LA+K +APQDAAMMQ+AET   G TQ GG A VM++ A  NE+ G+V   D    A +QGVT+  T++   RIITE++               T+Q     Q AIT+G+ALEAT +T GDKPV+ SDAAA++ AE+RATGSN++               N  +  DE+KIKL  VL GA+A LPA K VTRQDAE VV+AE RN+P + THPGGVA SM  AA LNEN+N
Sbjct:   22 IKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQKGGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYVQATPVMTSQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNVIIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELRNNPNVATHPGGVAASMAAAARLNENVN 263
The following BLAST results are available for this feature:
BLAST of CX046913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEA34_GOSHI6.960e-5852.48Late embryogenesis abundant protein D-34 OS=Gossyp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A03-B6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046913 ID=CX046913; Name=CX046913; organism=Citrus sinensis; type=EST; length=815bp
GTTAAAAAATGAGCCAGGAAGAGCCACGAAGGCCTCGGGAAGGCCAGGAG
CCGCGTGGTCCGATCAAATACGATGACGTTTTCAATGTCTCCGGTGGACT
CGCTTCAAAAGCTGTTGCACCACAGGATGCTGCGATGATGCAGAGCGCTG
AAACGGCGGCGTTTGGAAGCACACAGCCAGGCGGACAAGCCGAAGTCATG
CGATCCACTGCAAGAATAAACGAGCGTGCTGGTCTTGTCAGCCGTGGAGA
TGCCGCCGCTGATCAGGGCGTCACTATCACTGGAACTGAAATCCCTGCTG
GCCGCATAATCACTGAATCACTTGACGGACAGGTTGTTGGGCAATACGTC
CAAGTTGCAGCAGAGGCAACGACCCAACAAGGTGCGATTACGGTGGGACA
AGCCCTTGAAGCTACAATGCAAACAATCGGGGACAAGCCAGTGGAATTAA
GCGACGCTGCCGCAATCAGAGAAGCGGAAATGAGAGCGACTGGTAGTAAC
ATTGTAACCCAAGGCGGTTACGCAGCTTCAGCTCAGTCTGCGGCCGCCTA
CAACACTGGAATGATCGGCGATGAAGACAAGATAAAGCTTAGAGATGTTC
TGGCGGGCGCAAGTGCAGCTTTGCCAGCGAAGGTGGTGACGCGACAGGAT
GCTGAGGCGGTGGTGAACGCAGAGCGGAGGAATAGCCCGCAGTTGACGAC
ACATCCCGGAGGAGTGGCGGAGTCTATGGAAACTGCTGCTACGCTGAATG
AGAATATTAACATAAAATAATTGAGCTCTGTTNAAATTTACCATATGGTA
ATAATGGTACTGTCT
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