CX046910

Overview
NameCX046910
Unique NameCX046910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1367 contig Csv1_Contig1367:9..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.159e-51
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = -3
Query:  240 MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA 617
            MA R  I    SALIAMIADEDTVVGFL+AGVGNVD+RRKTNYLIVDSKTT++QIEDAFKEF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L S ESV+
Sbjct:    1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 64/114 (56.14%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  249 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 590
            A   ++A+I DEDTVVGFLL GVG ++  RK NYLIVD +TT+++IE+AF  F +R+DIAI+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct:    5 AKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 64/108 (59.26%), Postives = 87/108 (80.56%), Query Frame = -3
Query:  261 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 584
            +AL+A+I DED V GFLLAGVG  D ++  N+L+VDSKT+  +IE AFK FT+R DIAI++I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +
Sbjct:    9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKM 116          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.128e-30
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = -3
Query:  231 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVAFDR 578
            LI++I DEDT VGFLL GVG ++  R  N+++VD  T + +IED FK F  R+DI I+LI+Q  A  IR ++DSH  P PA+LEIPSKDHPYD ++DS+L R K + + E +  +R
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 55/112 (49.11%), Postives = 82/112 (73.21%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LI++I DEDT VGFLL G+G ++  R  N+++VD  T + +IE+ FK F  R+DI I+LI+Q VA  +R ++D+H  P+P++LEIPSKDHPYD ++DS+L R K + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
BLAST of CX046910 vs. ExPASy Swiss-Prot
Match: VATF1_DROME (V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  243 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 578
            LI++I DEDT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of CX046910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH1.159e-5180.16V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_CAEEL1.574e-3256.14Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_DICDI7.812e-3259.26V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT3.877e-3152.68V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE3.877e-3152.68V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_BOVIN8.637e-3151.79V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN1.128e-3051.79V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA5.598e-3051.72V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_MANSE2.779e-2949.11V-type proton ATPase subunit F OS=Manduca sexta GN... [more]
VATF1_DROME2.779e-2950.00V-type proton ATPase subunit F 1 OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A02-B4-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046910 ID=CX046910; Name=CX046910; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTCAGTCCAAAGCCACCGTGTATTATGCACACAAA
TACATACATATAAAACACAACTTGTATCCAAACTACTATTTCTTCACCAG
AGTTCATGAATAGTTGGTAGAAAAATTACCCAAGTACAAATATAGGAAGA
ATCATATATGTAACTATATAAATATGCAGTCGAGGGAAAGGAGATTAAAC
AGAGACACCACTGTATATCTAAGCTCAGCGCCTGTCAAATGCCACAGATT
CTACAGAGACGAGGTTCTTCACTCGTGAAAGAACTGAATCTTGTGCAGGA
TCATACGGATGATCCTTGGAAGGTATCTCCAAAATTGCAGGGATCGGCTT
GTTATGGCTATCAACCAAAAACCTTATCCTGTTTGCAACATATTGGCTAA
TTAGAACTATTGCGATATCCTCCCTGGATGTGAACTCTTTAAATGCATCT
TCAATTTGCTTTATAGTTGTTTTTGAGTCCACAATAAGGTAATTTGTCTT
CCTCCGCAAGTCAACATTCCCAACTCCAGCAAGCAAAAATCCAACTACAG
TGTCCTCATCTGCGATCATAGCGATGAGCGCCGAGGCAGCGGTACGTATT
TGAGGTCTATTAGCCATGCTGCATAAATTAAATTCTTGCGTCTTTTGTTC
GAGCTCAACTCCTCCCT
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