CX046907
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.127e-24 Identity = 79/194 (40.72%), Postives = 99/194 (51.03%), Query Frame = -3 Query: 295 QLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 849 QLQSP+ MN YP SSPVR+P G++ AFAKRS SF P +SN+SDW SP+GKL+WG+Q DELNKL++SASFG NN + + P+ DEPDVSWVNSLVK+ PE G + GA +K + W EQMYI+ EQ + Sbjct: 435 QLQSPS---RHSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.278e-24 Identity = 78/181 (43.09%), Postives = 95/181 (52.49%), Query Frame = -3 Query: 295 QMRQNMNQLRASYPAANLSSSPVRKP-SSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 825 QM QNMNQ YP SSPVR+P S G++ AFAKRS SF P T + SNLSDW SP+GKL+WG++G+ELNK+++S SFG NN + DEPDVSWVNSLVKD T + FG E+ + W EQMY E+EQ V Sbjct: 430 QMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22 Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = -3 Query: 292 FAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 681 FAKRSQSFIDRG + A S++S T S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR + T + EPDVSWVNSLVKD G + + EQEQMVA Sbjct: 492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.238e-19 Identity = 70/182 (38.46%), Postives = 96/182 (52.75%), Query Frame = -3 Query: 292 TGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAK-RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 834 +GLQ+R+++ + + +LSSSPV S F D FAK RSQSFI+R GL+ ++ ++ L+DW S DGKLDW VQGDEL KL+KS SF R+ + + + ++EPDVSWV LVK+ P+ E + WMEQ Y+E EQ VA Sbjct: 451 SGLQIRRSV--INPQLHSNSLSSSPVGANSLFSMDSSAVLASRAAE-----FAKQRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11 Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3 Query: 370 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 672 RS S D G +RA +V +P SS+ S W SP G DWGV G+EL KL++S+SF RS D+PD+SWV++LVK+ PE Q Sbjct: 625 RSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705 The following BLAST results are available for this feature:
BLAST of CX046907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046907 ID=CX046907; Name=CX046907; organism=Citrus sinensis; type=EST; length=872bpback to top |