CX046907

Overview
NameCX046907
Unique NameCX046907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7218 contig Csv1_Contig7218:229..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.127e-24
Identity = 79/194 (40.72%), Postives = 99/194 (51.03%), Query Frame = -3
Query:  295 QLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 849
            QLQSP+       MN     YP     SSPVR+P   G++               AFAKRS SF                  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQMYI+ EQ +
Sbjct:  435 QLQSPS---RHSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.278e-24
Identity = 78/181 (43.09%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  295 QMRQNMNQLRASYPAANLSSSPVRKP-SSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 825
            QM QNMNQ    YP     SSPVR+P S  G++               AFAKRS SF                 P T  +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W EQMY E+EQ V
Sbjct:  430 QMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579          
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22
Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  292 FAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 681
            FAKRSQSFIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    G              +   + EQEQMVA
Sbjct:  492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601          
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.238e-19
Identity = 70/182 (38.46%), Postives = 96/182 (52.75%), Query Frame = -3
Query:  292 TGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAK-RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 834
            +GLQ+R+++  +     + +LSSSPV   S F  D                FAK RSQSFI+R       GL+      ++ ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    WMEQ Y+E EQ VA
Sbjct:  451 SGLQIRRSV--INPQLHSNSLSSSPVGANSLFSMDSSAVLASRAAE-----FAKQRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607          
BLAST of CX046907 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  370 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 672
            RS S  D G   +RA   +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS                  D+PD+SWV++LVK+  PE Q
Sbjct:  625 RSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705          
The following BLAST results are available for this feature:
BLAST of CX046907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H29_ARATH1.127e-2440.72Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH3.278e-2443.09Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H33_ORYSJ1.799e-2251.54Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH9.238e-1938.46Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ9.260e-1141.58Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10H12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H12-P23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046907 ID=CX046907; Name=CX046907; organism=Citrus sinensis; type=EST; length=872bp
TGGCATTGAAACAAATAGTATTATATTTTGTAGATTACAGTGGGAATCAT
CAAAAGATTACACAATGTAGGGAAAGGGCTTTAGACCTCTTTCCATGTAA
GAGTGTAAAAACAATTAACAAATCTTTCTTTAAGCTAAACTATTAATGAT
ATGAGCAGGGCCTCATTTATCCTCACTATCTTCTCTCTTTTTTAGCTCCT
ACAACTTTAGCTACAAACGTGGAATCTAACAAGAATTCAAAGAATATTAA
TTTGGTCAGAATAAGGTAGGAGCACATAGCTGTTTTCATTATGCCACCAT
CTGCTCCTGTTCTATGTACATTTGCTCCATCCATGGATTGTATTGCTGCT
TCTCCGCACCAAACAATCCCTGTCCTTCTGGCGTAACATCTTTCACCAAG
GAATTAACCCAGGACACATCTGGCTCATCAACATTCGATGATGATGGAGT
GAAGCCTTTTGTTGTTGGGGTTGTTAGATTGTTGCTACGAAACCCGAATG
AAGCTGACTTCTTAAGTTTGTTCAGCTCATCTCCTTGAACTCCCCAATCC
AGTTTCCCATCAGGGGAGCTCCAATCTGATAGATTAGAGGATCTGATAGT
CGGAGGGTTAGAAACCATGCTGAGACCAGCACGACTGGTCACTGCTCCAC
GATCAATAAAACTCTGGCTTCGCTTTGCAAAGGCAGAAGACCTTGAATTC
ATCACTGCAGCTGCCACTGCAGCCGAAGAATCATACCCAAATGATGAAGG
TTTTCTCACTGGAGAGGATGAGAGGTTGGCAGCTGGATAGCTTGCACGAA
GTTGGTTCATGTTTTGGCGCATTTGAAGCCCGGTTGGAGATTGCAACTGA
GTTGGCGTTGATTGTTTCTGTG
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