DN618461

Overview
NameDN618461
Unique NameDN618461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618461 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 1 
Query:   16 KPPHIPE-LDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSE---SAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICA---PVSPGNSRVIWAFPRNF-------QIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPAN--------WQKACFVPTKSD 615
            +PP +P+  D P F+ +   RD+ YGY+ LMEN+ DP+H+ +AH+        KV   R+  +P+    E     GF    D     +AKF+APC  +   +L             A+  +   +  +I+IC+   P++PG +R I    RNF         W  +VVPRW  H   NL+ D D+ +L  +E+  +A    +        + K  F PT++D
Sbjct:  214 EPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHH--------KVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIEL------------DAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWW-QVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQAD 414
The following BLAST results are available for this feature:
BLAST of DN618461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH3.599e-1729.73Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02J15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618461 ID=DN618461; Name=DN618461; organism=Citrus sinensis; type=EST; length=617bp
ATTATCAAGACTAAGAAACCTCCTCACATCCCGGAACTCGATGACCCGTC
ATTTACAAAAATGTTTGGAAGCAGGGATGTTCCTTATGGATATGAGGTCC
TAATGGAAAATCTTATGGATCCTGCTCATCTTACATATGCACATTACGGA
ATGATGCGTACGAGGAAACCCAAAGTGATGCTCGATAGAGAAGGGGGAAG
ACCAATCAAAATAAGTTTCGAGAAAATAGACATAAATGGTTTCATTGCAA
AGCAGGATTCGGAAAGTGCCAAATTTTTGGCACCTTGTGTCTTTGTTGTT
TATTTTGATCTTCTGGAGAATCAGGAAAATGGATCTGCATCATCGGGAGG
AGCCGAAGAGAAGCTGAAGCAACGAAGAGTAGCTATGATTTTTATTTGTG
CTCCAGTAAGTCCGGGTAACAGCAGAGTAATCTGGGCCTTCCCAAGAAAC
TTCCAGATTTGGATAGACAAAGTTGTTCCGCGGTGGATATTTCATATTGG
ACAGAACCTAATTCTGGATTCAGATTTATGCCTGCTTCACGTTGAGGAGC
GAAAGATAATGGCTGTTGGCCCTGCTAATTGGCAGAAAGCTTGTTTTGTG
CCAACAAAATCCGATAA
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