CX046854

Overview
NameCX046854
Unique NameCX046854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1751 contig Csv1_Contig1751:88..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046854 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  501 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 728
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of CX046854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH1.765e-1242.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10F07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F07-L13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046854 ID=CX046854; Name=CX046854; organism=Citrus sinensis; type=EST; length=897bp
AGATAGTGTTCTTAGTCTTTTAGATAGACTAAGAAAATTTCAGCTCTTCC
TCATCTTATTAAACGGTTCTTGATATTTCATCATCAACCCCAACTTTGGG
TTGGAATTGCTATCTTCTTTTGGCTCTTTTTCAGGATTCTGCAGTCATCA
TTTTTCCTTTTTTAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTCAC
AAGATTTTGCTTGATTTCTGATTCAGTATCTCAAATTTAGTACAAAATTG
GGTATCTGTAAATTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAGTA
TGCCGTCCGCATCAGAAGGAATGCTATGCTTGATTCTAATGAACACTGCT
ATGTCAATCTCAATCGTCAAAGGCATATTCAGATCAATCCTCAAGGTTGT
CGGTTTCCAGCTTGCTGAATCATCATCGCCACCGTATTCATATTTCGCTT
CACCTCAAGTTGTCTCCGCAGAGCCAAATGATGTAAATTTAAGTCCTCCC
CTTAGCTATGTTGAGGAGTTCCGAAACCAGAATCCTGCAATCAAGTATGA
AACATTGCTCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGA
CCGAGTTTGAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATTTG
TTTCATAAAGTGTGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACGTG
CCCGCTTTGCAGGACACCTCTAATTCCTGAGTTTGAAGACGATCCCTCTT
GCTTCTGGTGAGAGTGTTTTATGAGTTTGTCTGGTTGAGGAGACTTCTAT
GTACAGCATGTAGTGTACAGGTATTTACTAATGCATCGGCTGGAGTGTAG
TGTTTATTACACGCCTTCTATGTGTGAGTTCAATCTCGAGTCCTTTT
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