DN618452

Overview
NameDN618452
Unique NameDN618452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.569e-86
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSF++ENK+LIG
Sbjct:  110 FVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.018e-85
Identity = 149/159 (93.71%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSF++ENK+LIG
Sbjct:  110 FVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.018e-85
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:  100 FVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 258          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.329e-85
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYAS +RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRT++DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:  107 FVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.268e-85
Identity = 149/159 (93.71%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:   78 FVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 236          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.268e-85
Identity = 149/159 (93.71%), Postives = 158/159 (99.37%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:  114 FVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.175e-83
Identity = 142/159 (89.31%), Postives = 157/159 (98.74%), Query Frame = -3
Query:  216 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 692
            FVL+GGRF+YASL+RLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP+YSFL+ENK+L+G
Sbjct:  115 FVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLVG 273          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 95/142 (66.90%), Postives = 118/142 (83.10%), Query Frame = -3
Query:  216 ILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 641
            I +F+ +MSAS DVLAMA +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIRKGPAP NLE+P Y F +E K++IG
Sbjct:   90 IQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPLYEFPEEGKLVIG 231          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 91/139 (65.47%), Postives = 119/139 (85.61%), Query Frame = -3
Query:  216 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 632
            F+ SM+A+ DVLAMA +EV+L++I  G  V VKW+GKPVFIR RT  +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F D +K+++G
Sbjct:   78 FISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 215          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53
Identity = 92/139 (66.19%), Postives = 116/139 (83.45%), Query Frame = -3
Query:  216 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 632
            F+ S SAS DVLAM+  EVDLS I  G  + VKW+GKPVFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIR+GPAP NL +P+Y+F + +K++IG
Sbjct:   91 FLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTF-EGSKIIIG 228          
The following BLAST results are available for this feature:
BLAST of DN618452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI3_TOBAC4.569e-8694.34Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC1.018e-8593.71Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI1_TOBAC1.018e-8594.34Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI_SOLTU1.329e-8594.34Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC2.268e-8593.71Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI2_TOBAC2.268e-8593.71Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI_MAIZE6.175e-8389.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR5.448e-5566.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST1.342e-5365.47Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO8.697e-5366.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618452 ID=DN618452; Name=DN618452; organism=Citrus sinensis; type=EST; length=694bp
CTTTTTTAGTAAACAAAAACAATGAAAATTTAGGTTAAAAGACAATGTGT
CAAAACCAGGCAACTTATTCTGAGTTACAGTATCCCAACCCCAATGAAAG
GGTGGCAAGACACAAAGATAGGCATTTATCTTCGACATTATCTGATAAAA
TATTTTAAAAAAAAATGAGATCCCAAATAACCATGGATCACCGGTACAGG
ACGTCACACTTATCAACCAATGAGCATCTTGTTCTCATCCAAGAAGGAGT
AAGAGGGTACTTCCAAATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCA
GAGATATCGTAATGAGAACCATGGCAAGGGCAAAACCATCCACCAAAGTC
ACCAGCATTTGGCAAAGGAATGCAACCAAGATGTGTGCAGACCCCAACAA
CTACAAGCCACTCCGGGTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCA
CGAAGAGATCCCAAATCAACACTGTTGGCCAGCTTGATATCTTCCTCAGT
CCGACGTCTGATGAAAACTGGCTTGCCCCGCCACTTAACAGTCACTGTGC
TGCCTGGCTCAATGCTGGACAGATCAACCTCAAGAGAGGCCATAGCAAGA
ACATCCTTACTCGCTGACATGCTCAGTACAAATTTAAGGATAAGTAGACG
GATGAGTGAAGCATACACAAACCTACCACCAGTCAGGACAAAGT
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