CX046850

Overview
NameCX046850
Unique NameCX046850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9358 contig Csv1_Contig9358:311..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: HDHD3_XENLA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.409e-15
Identity = 65/203 (32.02%), Postives = 92/203 (45.32%), Query Frame = -3
Query:  258 DAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDG-------RPFWQFIVSSS---TGCSDSQYFE----ELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 824
            D   TLL    P+ Q Y    +K G+  +   +   +R AY      SRL + N G       R +W  +V  +   +G  DS   +    +LY  ++T   W L  P A +   +    G+++AV+SNFD RL  +LR    + +FD           KP+  IF KA  L  V P  AVHVGDD  ND   AR  G  ++L
Sbjct:    9 DVKDTLLRVRVPVGQQYYAEAKKRGLCVNPGTLETSFRNAYRSH---SRL-FPNYGLAQGMSSRQWWLDVVLQTFRLSGIEDSDTVQSLAKQLYQDFSTAHNWALV-PGAREALDSCTNLGLRMAVISNFDRRLEELLRQCCLERYFDFVVTAESAGVAKPHLGIFHKALSLAKVPPHQAVHVGDDYVNDYCAARMVGMHSYL 206          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: HDHD3_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.188e-14
Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = -3
Query:  258 DAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYEQPWGGSRLRYVNDG---RPFWQFIVSSS---TGCSDSQYF----EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 824
            D   TL+   +P+ + Y      +GV   +  +   +R+AY           ++ G   R +W+ +V  +    G  D+Q      ++LY  +++   W + +  AE   K  RK G+KLAVVSNFD RL  +L  L     FD           KP+P IF +A     V+P  A HVGD    D  G++  G  ++L
Sbjct:   13 DVKDTLIKLRRPVGEEYASKARAHGVVVEDITVEQAFRQAYRAQSHNFPNYGLSRGLTSRQWWKDVVLHTFRLAGVPDAQAMTPVADQLYEDFSSPFTWQVLEG-AEMTLKGCRKRGLKLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRACVEPAVAAHVGDSYLCDYQGSQAVGMHSFL 210          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: HDHD3_BOVIN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.188e-14
Identity = 57/199 (28.64%), Postives = 88/199 (44.22%), Query Frame = -3
Query:  258 DAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYE---QPWGGSRLRYVNDGRPFWQFIVSSS---TGCSDSQYF----EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 824
            D   TLL    P+   Y      +G+      +   +++AY+   Q +    L +      +W  +V  +    G  D+Q      E+LY  +++   W + +  AE   +  RK G+KLAVVSNFD RL  +L  +     FD           KP+P IF +A  L  V+P    H+GD  + D  GAR  G  ++L
Sbjct:   13 DVKDTLLRLRHPVGVEYATKARAHGLEVEATALGQAFKQAYKAQSQSFPNYGLGHGLTSHQWWLDLVQQTFHQAGVRDAQAVAPIAEQLYKDFSSPSTWQVLEG-AEATLRGCRKRGLKLAVVSNFDRRLEDILEGVGLREHFDFVLTSEAAGWPKPDPRIFHEALHLAQVEPAVGAHIGDSYQRDYKGARAVGMHSFL 210          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: HDHD3_HUMAN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Homo sapiens GN=HDHD3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.160e-13
Identity = 57/199 (28.64%), Postives = 87/199 (43.72%), Query Frame = -3
Query:  258 DAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEILNRYRRAYE---QPWGGSRLRYVNDGRPFWQFIVSSS---TGCSDSQYF----EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 824
            D   TLL    P+ + Y      +G+    + +   +R+AY      +    L +    R +W  +V  +    G  D+Q      E+LY  ++    W + D  AE   +  R  G++LAV+SNFD RL  +L  L     FD           KP+P IF +A  L  ++P  A HVGD+   D  G R  G  ++L
Sbjct:   13 DVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDG-AEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFL 210          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: NANP_RAT (N-acylneuraminate-9-phosphatase OS=Rattus norvegicus GN=Nanp PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = -3
Query:  255 WQFIVSSSTGCSDSQYF-EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 647
            W+  +  + G +D++   EE Y  + + +  H+   E  K      +  V+L +++N D +  R  + A  C  +FD          EKP P+IF   CDLLGV+P D V VGD    D+ G  +AG  A +W
Sbjct:   76 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMTLEEDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVVGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVW 208          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: NANP_MOUSE (N-acylneuraminate-9-phosphatase OS=Mus musculus GN=Nanp PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = -3
Query:  255 WQFIVSSSTGCSDSQYF-EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 647
            W+  +  + G +D++   EE Y  + + +  H+   +  K      +  V+L +++N D +  R  + A  C  +FD          EKP P+IF   CDLLGV+P D V VGD    D+ G  +AG  A +W
Sbjct:   76 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVW 208          
BLAST of CX046850 vs. ExPASy Swiss-Prot
Match: REG2_DROME (Rhythmically expressed gene 2 protein OS=Drosophila melanogaster GN=Reg-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 54/203 (26.60%), Postives = 89/203 (43.84%), Query Frame = -3
Query:  273 DAAGTLLVPSQPMAQIYREIGEKYGVAYSEAEIL-----NRYRRAYEQPWGGSRLRYVNDGRPFWQFIVSSSTGCSDSQYFEE-LYNY-------YTTEKAWHLCDPEAE---KVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXEKPNPTIFLKACD---LLGVKPEDAVHVGDDRRNDVWGARDAG 824
            D   TLL       + Y EIG  +G      E+      N Y+   + P  G       + + +W+ +++ +   S +   +E L+N+       Y T   W  C+   E   ++ K ++    KL V++NFD RL  +L+    D + D          EKP+P IF KA +   L  +KPE+ +H+GD    D   A++ G
Sbjct:   13 DVTNTLLQFRTTPGKQYGEIGALFGARCDNNELAKNFKANWYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGTFAESGAAIPDEKLHNFSNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANFDPRLPTLLQNTKLDQYLDFAINSYEVQAEKPDPQIFQKAMEKSGLKNLKPEECLHIGDGPTTDYLAAKELG 215          
The following BLAST results are available for this feature:
BLAST of CX046850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDHD3_XENLA4.409e-1532.02Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_MOUSE2.188e-1429.15Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_BOVIN2.188e-1428.64Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_HUMAN3.160e-1328.64Haloacid dehalogenase-like hydrolase domain-contai... [more]
NANP_RAT2.957e-1131.58N-acylneuraminate-9-phosphatase OS=Rattus norvegic... [more]
NANP_MOUSE6.588e-1130.83N-acylneuraminate-9-phosphatase OS=Mus musculus GN... [more]
REG2_DROME8.604e-1126.60Rhythmically expressed gene 2 protein OS=Drosophil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10F05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F05-L9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046850 ID=CX046850; Name=CX046850; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGCTGAAATTGTAAATTATTTATTACATAAACAA
GCTGAAGTTTGTCTTCCTACAACCAGTCCTATCTAGTCTGTTCCCACATC
CGTCCGATGCAGAATATACACAGATCTCTCACCAAAAGCTAAAACAAACC
TGTACATAAAGCATTCTTCTGAGCGGTCGGTTAAGATCGGCCTTCTCTTA
AACTTTGACCCCTATCCTTTGAGCAACCTCCTTAAAGGAGTGGACATCAC
TTCCCCAAAGCCAAGCATCACAACCTGCATCCCTGGCACCCCACACATCA
TTCCTACGATCATCCCCTACATGTACAGCATCCTCAGGTTTTACTCCCAA
CAAATCACAAGCTTTTAGGAATATTGTTGGATTTGGCTTCTCTGCTTCAA
CTTCAGCTGACACTGCAACAGCATCGAACCAATGATCACAATTTAGAGCT
CGCAACACAGGTCTTAACCGAGTATCAAAGTTTGACACAACAGCCAATTT
GACTCCTGCTTTTCTGATAGCCTTAAATACCTTTTCAGCTTCAGGATCAC
AGAGGTGCCATGCCTTTTCAGTGGTATAGTAGTTATATAGTTCTTCAAAA
TACTGGGAATCTGAACAACCAGTAGACGAACTAACTATAAATTGCCAGAA
GGGTCTCCCATCATTCACATATCTGAGACGAGATCCTCCCCATGGCTGCT
CATAAGCCCTTCTGTATCTGTTCAATATCTCCGCCTCAGAGTAGGCAACA
CCATACTTCTCTCCAATCTCTCTATATATCTGGGCCATGGGCTGAGAAGG
AACAAGGAGAGTACCAGCAGCGTCAACGAGCA
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