CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4154 contig Csv1_Contig4154:248..903. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 5.234e-97
Identity = 182/196 (92.86%), Postives = 187/196 (95.41%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISI ANI RVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLA+SSIGHVGYI  GFSCGTIEGIQSLLIGIFIYALMT+DAFAIVLALRQTRVKYIADLGALAKTNPI AITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLA VGVVTSVIG
Sbjct:  241 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLALVGVVTSVIG 436          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 4.431e-96
Identity = 180/196 (91.84%), Postives = 186/196 (94.90%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            I+ +  +MWAPDIYEGSPTPVTAFLSIAPKISI ANI RVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLA+SSIGHVGYI  GFSCGTIEGIQSLLIG+FIYAL TI+AFAIVLALRQTRVKYIADLGALAKTNPI AITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLA VGVVTSVIG
Sbjct:  230 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGLFIYALTTINAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIG 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 7.090e-86
Identity = 161/195 (82.56%), Postives = 172/195 (88.21%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  +MWAPD+YEGSPT VTAF SIAPKISI AN+ RVFIY  Y  T QQ+FFFCSIASMILGALAAMAQ KVKRLLA+SSIGHVGY+  GFSCGTIEGIQSLLIGIFIY LMT++ FAIVLALRQ R KYIADLGALAKTNPI AIT SITMFSYAGIPPLAGFCSKFYLFFAALGCGAY LA +GVVTSVI
Sbjct:  231 ITAVPFHMWAPDVYEGSPTIVTAFFSIAPKISILANMLRVFIYSFYDPTWQQLFFFCSIASMILGALAAMAQNKVKRLLAYSSIGHVGYLLIGFSCGTIEGIQSLLIGIFIYVLMTVNVFAIVLALRQNRFKYIADLGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYLLALIGVVTSVI 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_BETVU (NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 7.107e-78
Identity = 159/204 (77.94%), Postives = 165/204 (80.88%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTI---EGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRVS 654
            YMWAPDIYEGSPTPVTAF SIAP+ SISANI RVFIYGSYGATLQQIFFFCSIA  +    A   + K     A SSIG + Y    F    +   EGIQSLLIG+FIYA M    FAIV ALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG WAAGRLPRVS
Sbjct:  217 YMWAPDIYEGSPTPVTAFFSIAPERSISANILRVFIYGSYGATLQQIFFFCSIALRLRSTGAMANEGK-----ASSSIGQLDYGGLYFVLVLMWNREGIQSLLIGLFIYASMDDRCFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCWAAGRLPRVS 415          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_RHORT (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoN PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.634e-48
Identity = 94/203 (46.31%), Postives = 137/203 (67.49%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            L+  +S +  +MWAPD+YEG+PTPVTAF ++APKI+     +RV +  + +Y    QQ+    SI SM+LG  AA+ QT +KRL+A+SSIGHVGY   G + GT EG++ +L+ + IY  M +  F ++LA+RQ    V+ I DL  L+K +P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G + LA +GV++SV+
Sbjct:  218 LAFKVSAVPFHMWAPDVYEGAPTPVTAFFAVAPKIAALTLFARVMMGPFAAYADQWQQVIILISILSMLLGGFAAIVQTNIKRLMAYSSIGHVGYALIGIAAGTTEGVRGVLVYLAIYLFMNVGTFTVILAMRQKGRAVEGINDLAGLSKQHPMMAAAMAVFMFSMAGVPPLAGFFGKFYVFMAAVNSGLFALAVIGVLSSVV 420          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_AZOC5 (NADH-quinone oxidoreductase subunit N OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoN PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 99/210 (47.14%), Postives = 139/210 (66.19%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGAT--LQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            +S +  +MW PD+YEG+PTPVTAF + APK++  A   RV +      T   QQI  F SIASM LGA AA+ Q  +KRLLA+SSIGH+G+   G + GT +G+  +L+ + IY +MT+ +F  VLA+R+    V+ I DL  LA+T P+ A+  +  MFS AGIPPLAGF +K+Y+F AA+  G Y LA +GVV SV+G +   R+ ++
Sbjct:  217 VSAVPFHMWTPDVYEGAPTPVTAFFATAPKVAAMAVFVRVAVEALPHVTHSWQQIVTFVSIASMALGAFAAIGQRNIKRLLAYSSIGHMGFALVGLAAGTEQGVTGVLLYMAIYVVMTLGSFTCVLAMRRDGRSVETIEDLAGLARTKPLMALALAALMFSLAGIPPLAGFVAKYYVFLAAIQAGLYGLAVIGVVASVVGAYYYLRVVKI 426          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_MAGSA (NADH-quinone oxidoreductase subunit N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.488e-47
Identity = 95/214 (44.39%), Postives = 143/214 (66.82%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            LS  +S +  +MWAPD+YEG+PTPVT+F ++APKI+    + RV    +       +Q+  F +I SM +G+ AA+ QT +KRL+A+SSIGHVG++  G + G+  GIQ +LI + IY  M + AFA++L++RQ    V+ I DL  L+KT+P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G Y L+ +GV++SV+  +   R+ +V
Sbjct:  219 LSFKVSAVPFHMWAPDVYEGAPTPVTSFFAVAPKIAALCLLVRVMTGPFADLVEQWRQVVTFIAIGSMFVGSFAAVVQTNIKRLMAYSSIGHVGFVLVGIAAGSTLGIQGVLIYLAIYLFMNVGAFAVILSMRQKGRMVEGIDDLAGLSKTHPMMAFVMAVLMFSMAGVPPLAGFWGKFYVFMAAIESGLYTLSILGVLSSVVSTYYYLRIVKV 432          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_METNO (NADH-quinone oxidoreductase subunit N OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=nuoN PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.220e-46
Identity = 98/210 (46.67%), Postives = 141/210 (67.14%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYG--ATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            ++ +  +MW PD+YEG+PTPVTAF + APK++  A   RVFI    G  A  QQI  F +IASM LG+ AA+ Q  +KRL+A+SSIG+VGY   G + GT EG++ +++ + IY  MT+ AFA++L +R+    +  I DL  L++T+P  A   ++ MFS AGIPPLAGF +KFY+F AA+  G   LA +GVVTSV+G +   R+ ++
Sbjct:  223 LAAVPFHMWTPDVYEGAPTPVTAFFASAPKMAAMAMTVRVFIGAFPGVVAEWQQIIVFIAIASMALGSFAAIGQRNLKRLMAYSSIGNVGYALIGLAAGTEEGVRGVVVYMAIYLAMTLGAFAVILGMRRGNRMFETIEDLSGLSRTHPWLAFCLAMMMFSLAGIPPLAGFFAKFYVFAAAIKAGLNVLAVIGVVTSVVGAYYYVRIVKI 432          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_PARL1 (NADH-quinone oxidoreductase subunit N OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoN PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 95/214 (44.39%), Postives = 141/214 (65.89%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS +  +MW PD+YEG+PTPVTAF + APK++  A I RV    + S  +  QQI  F +IASM+LGA AA+ Q+ +KRL+A+SSI H+G+   G + GT EG++ +LI + IY +M    F  +LA+++    V+ I+DL  L++  P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G Y LA +GV+ SV+G +   R+ ++
Sbjct:  218 LAFKISAVPFHMWTPDVYEGAPTPVTAFFAGAPKVAAMALILRVLFVAFPSMESEWQQIIVFIAIASMVLGAFAAIGQSNIKRLMAYSSISHMGFAMVGLAAGTPEGVRGVLIYLVIYVVMNAGVFCCILAMQRKEGYVENISDLAGLSRNQPMVAFMMAMLMFSLAGVPPLAGFFGKFYVFMAAVEAGLYPLAVIGVLASVVGAFYYLRIVKI 431          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_RHOCS (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoN PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 92/214 (42.99%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS +  +MW PD+YEG+PT VTAF ++APK++  A   RV +  +G   A  QQ+ +F ++ASM+LG+LAA+ Q  +KR++A+SSIGH+GY   G + GT EG++ +LI + IY  M +  FA++L++R     V+ I DL  L++++P+ A+  +  MFS  G+PP+AGF  K Y+F AA+    Y LA +GV+TSVI  +   R+ +V
Sbjct:  215 LAFKISAVPFHMWTPDVYEGAPTSVTAFFAVAPKVAALALFVRVLVDPFGELLAQWQQVVWFSAVASMLLGSLAAIQQRNIKRMMAYSSIGHIGYALVGLAAGTEEGVRGVLIYLAIYLAMNVGTFAVILSMRVNGRMVENIDDLSGLSRSHPMMALAMAFFMFSLGGVPPMAGFFGKLYVFMAAIEAQLYVLAVIGVLTSVISLFYYLRIVKV 428          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU2M_ARATH5.234e-9792.86NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_OENBE4.431e-9691.84NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_MARPO7.090e-8682.56NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
NU2M_BETVU7.107e-7877.94NADH-ubiquinone oxidoreductase chain 2 OS=Beta vul... [more]
NUON_RHORT2.634e-4846.31NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]
NUON_AZOC52.912e-4747.14NADH-quinone oxidoreductase subunit N OS=Azorhizob... [more]
NUON_MAGSA6.488e-4744.39NADH-quinone oxidoreductase subunit N OS=Magnetosp... [more]
NUON_METNO3.220e-4646.67NADH-quinone oxidoreductase subunit N OS=Methyloba... [more]
NUON_PARL15.492e-4644.39NADH-quinone oxidoreductase subunit N OS=Parvibacu... [more]
NUON_RHOCS9.368e-4642.99NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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