CX046844

Overview
NameCX046844
Unique NameCX046844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:230..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.823e-69
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIANKA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.073e-68
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.401e-68
Identity = 123/132 (93.18%), Postives = 125/132 (94.70%), Query Frame = -1
Query:  279 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANK 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNN+ANK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.401e-68
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 258.84 bits (660), Expect = 1.830e-68
Identity = 124/133 (93.23%), Postives = 125/133 (93.98%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIA KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 4.076e-68
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGL+WLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.549e-67
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEI DKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIA+K+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 2.023e-67
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+ EARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNI++KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 5.886e-67
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDK GLHSLRQRHWYIQS CAT GEGLYEGLDWLSNNIANKA
Sbjct:   49 IGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CX046844 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.004e-66
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = -1
Query:  276 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGFIFVVDSNDRARIVEARDELHRMLNEDELRDAVLLVFANKQDFPNPMNAAEITDKLGLHSLRQRHWYIQSPCATFGEGLYEGLDWLSNNIANKA 674
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG IFVVDSNDR R+VEARDELHRMLNEDELRDAVLLVFANKQD PN MNAAEITDKLGL+SLRQRHWYIQS CAT GEGLYEGLDWLS+NIA K+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of CX046844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
ARF2_ORYSJ2.823e-6993.98ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.073e-6893.23ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.401e-6893.18ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_ARATH1.401e-6893.23ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH1.830e-6893.23ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN4.076e-6892.48ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA1.549e-6791.73ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA2.023e-6791.73ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO5.886e-6791.73ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE1.004e-6690.98ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F02-L3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046844 ID=CX046844; Name=CX046844; organism=Citrus sinensis; type=EST; length=674bp
TTTTTTTTTTTTTTTTTGCGAAAAAAACAATTTCAAATATGAGTGGGGCA
CCAAATTAGTTTCAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAG
TACATGTATCCAACCAACAATTCTTCTATTACAATATAGTTGTAAAGATC
CTAGGACCAAAACAACACAACAACCCAAACGTCTCAAACAAAAAGGGTTA
AAAAAAAAAAAAAATAAATAATATTCCCCCCTGCATCCAGAATTGCCAGT
CCGCAAAAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAA
AGCCAATCCAGACCTTCATAAAGACCCTCACCAAAGGTTGCACAGGGGCT
CTGGATGTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAG
TAATCTCAGCAGCATTCATTGGATTTGGAAAATCCTGTTTGTTAGCAAAT
ACAAGCAACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAA
TTCATCCCTTGCTTCTACAATACGGGCTCTGTCATTGCTGTCCACAACAA
AAATGAAACCTTGAGTGGTCTGGAAATAATGCCTCCACAAGGGACGAATC
TTGTCCTGGCCACCAACATCCCACACAGTGAAACTGATGTTTTTATATTC
AACGGTCTCCACATTAAACCCAAT
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