DN618447

Overview
NameDN618447
Unique NameDN618447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 7.271e-82
Identity = 151/174 (86.78%), Postives = 163/174 (93.68%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            ++VFET++GVE I SF  MGIKDDLLRG+YQYGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMIALTVCQ VDT S EVQALILSPTRELA QTEKVILAIGD+IN+QAHAC+GGKSVGEDIRKLEHGV VVSGTPGRVCDMIKR+TLRTR IKLL+LD+SDEMLSRGFK
Sbjct:    5 RLVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFK 178          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 4.713e-81
Identity = 149/174 (85.63%), Postives = 165/174 (94.83%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+VFETT+G+E ITSF+ MGIK+D+LRG+Y+YGFEKPSAIQQRAVMPI++GRDVIAQAQSGTGKTSMIAL+VCQ VDTSSREVQALILSPTRELATQTEK I AIG   NIQAHAC+GG SVGEDIRKLEHGVHVVSGTPGRVCDMIKR++LRTRAIKLL+LD+SDEMLSRGFK
Sbjct:   22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFK 195          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.055e-80
Identity = 146/173 (84.39%), Postives = 162/173 (93.64%), Query Frame = 2
Query:  104 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            + FET+ GVE I+SFD MGI+DDLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGDFINIQ HAC+GGKS+GEDIRKLEHGVHVVSGTPGRVCDMIKR+TLRTRAIKLL+LD++DEML RGFK
Sbjct:   19 LTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.980e-79
Identity = 144/173 (83.24%), Postives = 162/173 (93.64%), Query Frame = 2
Query:  104 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            + FET+ GVE I+SFD MGI++DLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGD+INIQ HAC+GGKS+GEDIRKLEHGVHVVSGTPGRVCDMIKR+TLRTRAIKLL+LD++DEML RGFK
Sbjct:   19 LTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 2.682e-68
Identity = 125/173 (72.25%), Postives = 153/173 (88.44%), Query Frame = 2
Query:  104 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            +VFETT+G++ I SFD MG+ D +LRG+Y YG++KPS IQQRA++PI+KGRDVIAQAQSGTGKTSMIA++VCQ V+ SSR+VQ L+LSP+RELA+QTEK I AIG   NIQAHAC+GGKS+GEDI+KLE GVH VSGTPGRV DMIKR +L+T+A+KLLVLD+SDEMLS+G K
Sbjct:   10 LVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLK 182          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.510e-66
Identity = 116/174 (66.67%), Postives = 153/174 (87.93%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+ FE++E V+  T+FDAMG+K+DLLRGIY Y FEKPSAIQQRA++PII+GRDVIAQAQSGTGKT+  ++++ Q++DT+ RE QAL+LSPTRELA Q + V+LA+GD++N+Q HAC+GG SVGEDIRKL++G H+VSGTPGRV DMI+R+ LRT+ IK+L+LD+SDE+L+ GFK
Sbjct:   11 KLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFK 184          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.378e-64
Identity = 117/174 (67.24%), Postives = 150/174 (86.21%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLD++DEML++GFK
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 202          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.378e-64
Identity = 117/174 (67.24%), Postives = 150/174 (86.21%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLD++DEML++GFK
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 193          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.378e-64
Identity = 117/174 (67.24%), Postives = 150/174 (86.21%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLD++DEML++GFK
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 202          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.069e-64
Identity = 116/174 (66.67%), Postives = 150/174 (86.21%), Query Frame = 2
Query:  101 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLD++DEML++GFK
Sbjct:   24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 197          
The following BLAST results are available for this feature:
BLAST of DN618447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_NICPL7.271e-8286.78Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH2_ARATH4.713e-8185.63DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
RH2_ORYSJ3.055e-8084.39DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH34_ORYSJ1.980e-7983.24DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH34_ARATH2.682e-6872.25DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
FAL1_USTMA2.510e-6666.67ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_XENTR1.378e-6467.24Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE1.378e-6467.24Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA1.378e-6467.24Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A3_TAEGU3.069e-6466.67Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618447 ID=DN618447; Name=DN618447; organism=Citrus sinensis; type=EST; length=624bp
ATTCTTTGATTTCGAAGAGTAGTTGTTGCGAATTTCGTGCGAGATGGCGG
CGGCGACGGCTATGCGGAGGAGAGGAGGGGGCGGCGGAATGGATGACGAC
AAGATGGTGTTCGAAACAACGGAAGGAGTGGAGGCAATCACGAGCTTCGA
CGCAATGGGAATAAAAGACGATCTGTTGCGTGGAATTTATCAGTACGGAT
TCGAGAAGCCATCGGCCATACAACAGAGGGCCGTTATGCCAATAATAAAG
GGCCGTGATGTAATTGCACAGGCCCAGTCTGGTACTGGCAAGACCTCTAT
GATTGCCCTAACTGTTTGCCAGACGGTCGATACTTCTAGCAGAGAGGTGC
AGGCGTTGATTTTGTCACCTACGAGGGAGTTGGCGACGCAGACAGAGAAA
GTGATTTTGGCAATTGGTGATTTTATTAACATACAAGCACATGCGTGTGT
TGGAGGCAAAAGTGTCGGGGAAGATATTAGGAAGTTAGAGCATGGAGTTC
ATGTGGTGTCTGGAACTCCGGGTAGAGTCTGTGATATGATTAAGAGGAAA
ACTTTGCGTACTAGAGCTATTAAATTATTGGTGCTTGATGATTCTGATGA
GATGCTGAGCAGAGGGTTCAAGGA
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