DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.729e-54
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKERDAIM EFR GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  286 SMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.332e-53
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  299 AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.332e-53
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  299 AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.390e-53
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKERDAIM EFRSG +RVLITTDVWARG+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  303 SMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.917e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  301 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  310 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  305 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  301 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_NICPL8.729e-5497.17Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH34_ORYSJ4.332e-5395.28DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH2_ORYSJ4.332e-5395.28DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH2_ARATH7.390e-5395.28DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_DANRE6.917e-5190.57Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
IF4A3_XENTR9.034e-5190.57Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_TAEGU9.034e-5190.57Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_SALSA9.034e-5190.57Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_RAT9.034e-5190.57Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG9.034e-5190.57Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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