DN618445

Overview
NameDN618445
Unique NameDN618445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.170e-54
Identity = 122/164 (74.39%), Postives = 133/164 (81.10%), Query Frame = 2
Query:   86 MAASSACLVGNILTTHKT-KTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLS-QKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            MAASSACLVGN L+ + T K  LSK F GR     +SF S+ +  KV VVKASL  +K+ EGRR FLK LLGN GVG  L+ SGKA ADEQGVSSSRMSYSRFLEYLDKDRV KVDL+ENGTIAIVEA+SPELGNRV+RVRVQLPGLSQELLQK R KNIDFAA
Sbjct:    1 MAASSACLVGNGLSVNTTTKQRLSKHFSGRQ----TSFSSVIRTSKVNVVKASLDGKKKQEGRRDFLKILLGNAGVG--LVASGKANADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYENGTIAIVEAVSPELGNRVERVRVQLPGLSQELLQKLRAKNIDFAA 158          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.657e-52
Identity = 112/164 (68.29%), Postives = 123/164 (75.00%), Query Frame = 2
Query:   86 MAASSACLVGNILTTHKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSQKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADEQG--VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            MAASSACL+GN L+ + TK    K               L++  KV VVKASL +K+HEGRRGF K LLGN   G  LL SG A ADEQG  VSSSRMSYSRFLEYLDK RV+KVDL+ENGTIAIVEA+SPELGNR+QRVRVQLPGLSQELLQK R KNIDFAA
Sbjct:    1 MAASSACLLGNGLSVYTTKQRFQK-------------LGLDRTSKVTVVKASLDEKKHEGRRGFFKLLLGNAAAGVGLLASGNANADEQGQGVSSSRMSYSRFLEYLDKGRVEKVDLYENGTIAIVEAVSPELGNRIQRVRVQLPGLSQELLQKLRAKNIDFAA 151          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.109e-44
Identity = 95/115 (82.61%), Postives = 101/115 (87.83%), Query Frame = 2
Query:  230 VKASLSQKQHEGRRGFLKKLLGNVGVGT-ALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            V ASL  K ++ RR FLK  LGN+GVG   LLG+ +A A+EQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK REKNIDFAA
Sbjct:   31 VTASLEHKTNDARRKFLKLALGNLGVGLPTLLGAKRALAEEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKNIDFAA 145          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  197 RSLEKKPKVAVVKASLSQKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADE---QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            R+     K+    +S S+     RR  L+     +G+G  L  +  A A+    + V+S+RMSYSRFLEYLD   VKKVD FENGT+A+ E       +RV RV+VQLPGL  EL++K R+K +DFAA
Sbjct:   30 RTTPPPAKITPPSSSSSEAAGLSRRRLLQS--AGLGLGLGLTAARPARAEATAPEEVTSNRMSYSRFLEYLDAGAVKKVDFFENGTVAVAEVDDAAALSRVHRVKVQLPGLPAELVRKLRDKGVDFAA 155          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  350 QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            + ++SSRM+Y RFLEYLD   VKKVDL++ G  AIVEAI PELGNR+QR+RV+LP  + EL+ K R+ N+D  A
Sbjct:   36 KNIASSRMTYGRFLEYLDLGWVKKVDLYDEGHTAIVEAIGPELGNRIQRIRVELPATAPELITKLRKANVDLDA 109          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  356 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  A
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDA 109          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  356 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  A
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDA 109          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  305 VGTALLGSGKAYADEQ-GVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            +GT L    KA  +     +S+RMSYSRFL++L ++ VKKVDL ENGT+AIVE  +P +G ++QRVRV LPGL  +L+++ +EKN+DFAA
Sbjct:   71 LGTVLAHPAKAEPEAPIEATSNRMSYSRFLQHLKENEVKKVDLIENGTVAIVEISNPVVG-KIQRVRVNLPGLPVDLVREMKEKNVDFAA 159          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  356 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            V SS+M+Y RFLEYL+   V +VDL++N   AIV+A SPELGNR Q +RV++P  + +L+QK +E NIDF A
Sbjct:   50 VISSKMTYGRFLEYLEMGWVNQVDLYDNSRNAIVQASSPELGNRPQTIRVEIPVGASQLIQKLKEYNIDFDA 121          
BLAST of DN618445 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  359 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAA 571
            SSSRM+Y RFLEY+D + VKKVDL++N   AIV+ I+P++    Q VRV+LP  S EL+ K + K IDF A
Sbjct:   37 SSSRMTYGRFLEYIDMNWVKKVDLYDNARTAIVDIINPDIKGEEQLVRVELPTFSSELVSKLKNKLIDFDA 107          
The following BLAST results are available for this feature:
BLAST of DN618445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FTSH2_ARATH4.170e-5474.39Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH6.657e-5268.29Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ5.109e-4482.61Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ORYSJ6.720e-2044.53Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_GUITH9.703e-1959.46Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU1.267e-1861.11Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE1.267e-1861.11Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH6_ARATH6.289e-1853.33Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_ODOSI4.983e-1555.56Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_CYACA2.473e-1454.93Cell division protease ftsH homolog OS=Cyanidium c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02J07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618445 ID=DN618445; Name=DN618445; organism=Citrus sinensis; type=EST; length=572bp
GCTATATTTACCCTTTTGTTTTAGTCATCAAATTAGTTCTTTTGATTGAC
ACTATTATTTATTTGATTCTCTTGATTCATCACAAATGGCAGCTTCATCA
GCTTGCCTTGTAGGGAATATTTTGACAACACACAAGACTAAAACAAATTT
GAGCAAGGACTTCCATGGTAGGCATCTTCTGTTTAACTCGAGTTTTCGAT
CATTGGAAAAGAAGCCAAAAGTAGCCGTTGTAAAGGCATCTTTGAGCCAG
AAGCAGCATGAAGGAAGAAGAGGGTTTCTTAAGAAGCTGCTTGGAAATGT
TGGAGTTGGTACTGCTTTGTTGGGGAGTGGGAAAGCCTATGCCGATGAAC
AGGGGGTTTCTTCCTCTAGGATGTCTTACTCTAGGTTCTTGGAGTATCTT
GATAAGGACAGGGTGAAGAAGGTTGATTTGTTTGAGAATGGTACCATAGC
TATTGTGGAGGCTATTTCCCCTGAGTTGGGTAACCGGGTGCAACGAGTTC
GCGTTCAACTTCCAGGTCTAAGTCAGGAGCTTCTCCAGAAATTCAGGGAG
AAGAACATTGATTTTGCTGCCC
back to top