CX046842

Overview
NameCX046842
Unique NameCX046842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046842 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.302e-47
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = -1 
Query:  445 QNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLFLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 756
            QNFGEPFFLVIHEGETL+EIK RIQ+KL VPDE+FAKWKFA   +GRP+YL DTD+V +RFQRRDVYGAWEQYLGLEH D+APKRAYAANQNRH YEKPVKIYN
Sbjct: 1012 QNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1115
[Close]
BLAST of CX046842 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.220e-47
Identity = 87/104 (83.65%), Postives = 97/104 (93.27%), Query Frame = -1 
Query:  445 QNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLFLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 756
            QNFGEPFFLVIHEGETL+EIK RIQ+KL V DE+FAKWKFAF+ +GRPEYLQDTD+V +RFQRRDVYGA+EQYLGLEH+D+ PKRAYAANQNRH YEKPVKIYN
Sbjct: 1013 QNFGEPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116
[Close]
BLAST of CX046842 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  445 FGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLFLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 750
            FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct: 1004 FGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103
[Close]
BLAST of CX046842 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  445 FGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLFLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 750
            FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct: 1004 FGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103
[Close]
BLAST of CX046842 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  445 FGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLFLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 750
            FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct: 1003 FGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1102
The following BLAST results are available for this feature:
BLAST of CX046842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBP13_ARATH1.302e-4783.65Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH2.220e-4783.65Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP7_RAT4.373e-1137.74Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE4.373e-1137.74Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN4.373e-1137.74Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10F01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F01-L1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046842 ID=CX046842; Name=CX046842; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTACAAAAAAATATGTATATATATCTCTCTGTGTG
GAAACAGGCTCACAACAGTGGCTGATCAGCCATCTACATGAAAACAAAAA
TCAGGAAAGCAAACATGATGAAAAAGGAAAATAAAGAAACAAGGATTAAT
TAAAAAGGGGAAAAAAAGAAAACAAGGATCACCCACTATACCCTATAAAT
ATATCTGTGACAACACTTGCAAATAGATACACATTTGCTAAAGGGGAAAT
GTCCTCCCAATCCAAGCTAGCTGAAGAAAAATTACAATACCCCAATAAAG
TCAACAACCGTATGCTTTCCCTTTTCACCTTTATAGCCTCGATCCCTTTT
CATTTTGCCCATTTTTACAGATCAATTGGTGTTGAGGCTTACCAACTGAA
TCCACAGCCATGAATGAAATTCATGCATCTTCAAATGTTTCCTAATTGTA
GATTTTAACTGGCTTCTCATACGTATGCCGATTCTGGTTAGCAGCATATG
CCCTTTTAGGAGCACTGTCTGAGTGTTCCAATCCAAGATATTGCTCCCAA
GCACCATAAACATCTCTTCTCTGAAAACGACTGGAAACAATGTCCGTGTC
CTGAAGGTATTCTGGGCGACCAAGAAAAAGGAATGCAAACTTCCACTTAG
CAAACTCTTCATCTGGAACTTGCAGTTTCCTCTGTATTCGCACTTTTATT
TCTTGCAGAGTCTCACCTTCATGTATAACTAAGAAAAACGGTTCACCGAA
GTTCTGCCT
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