CX046834

Overview
NameCX046834
Unique NameCX046834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: LEGA_GOSHI (Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   97 NLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSP------QRDRXXXXXXXXXTPSYERDNGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            NL   FD   LA+AFNV+ D+                V + L+V++P      +R+          T    +DNG EET C+M+++ N+  P  AD++NP+AGR++T+NRFNLPIL
Sbjct:  251 NLLCAFDRNFLAQAFNVDHDIIRKIQRVRGNRGTIIRVRDRLQVVTPPRMEEEEREERQQEQRYRHTRGGSQDNGLEETFCSMRIKENLADPERADIFNPQAGRISTLNRFNLPIL 366          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: 11SB_CUCMA (11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   88 RAGNLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERDNGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            ++GN+F GF +  L EAF ++  L                V+E+  VL P++D              E +NG EETICT++L+ NI +   ADV+NPR GR++T N   LPIL
Sbjct:  226 KSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSVRADVFNPRGGRISTANYHTLPIL 338          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: 11S3_HELAN (11S globulin seed storage protein G3 OS=Helianthus annuus GN=HAG3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.436e-14
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 1
Query:   85 RRAGNLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERD------------NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            + AGN+F GF   L+A++FNV+ +                 V ++L+++ P +DR           S  +             NG EETIC+MK + NID PS AD  NP+AG +  +N F  PIL
Sbjct:  222 QNAGNIFNGFTPELIAQSFNVDQETAQKLQGQNDQRGHIVNVGQDLQIVRPPQDRRSPRQQQEQATSPRQQQEQQQGRRGGWSNGVEETICSMKFKVNIDNPSQADFVNPQAGSIANLNSFKFPIL 347          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: LEGB7_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.883e-14
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   79 DDRRAGN-LFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERD-NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            ++++ GN +  GF    LA+ FN   D                 VE  LR+++P+  +             E+  NG EETIC++K+R NI +P+ AD+YNPRAG ++T N   LPIL
Sbjct:   79 EEQKDGNSVLSGFSSEFLAQTFNTEEDTAKRLRSPRDKRNQIVRVEGGLRIINPEGQQEEEEQEEEEKQRSEQGRNGLEETICSLKIRENIAQPARADLYNPRAGSISTANSLTLPIL 196          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: LEGB2_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.883e-14
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   79 DDRRAGN-LFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERD-NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            ++++ GN +  GF    LA+ FN   D                 VE  LR+++P+  +             E+  NG EETIC++K+R NI +P+ AD+YNPRAG ++T N   LPIL
Sbjct:   79 EEQKDGNSVLSGFSSEFLAQTFNTEEDTAKRLRSPRDKRNQIVRVEGGLRIINPEGQQEEEEEEEEEKQRSEQGRNGLEETICSLKIRENIAQPARADLYNPRAGSISTANSLTLPIL 196          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.686e-13
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   79 DDRRAGN-LFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERD-NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            ++++ GN +  GF    LA  FN   D                 VE  LR+++P+  +             E+  NG EETIC++K+R NI +P+ AD+YNPRAG ++T N   LPIL
Sbjct:  228 EEQKDGNSVLSGFSSEFLAHTFNTEEDTAKRLRSPRDKRNQIVRVEGGLRIINPEGQQEEEEEEEEEKQRSEQGRNGLEETICSLKIRENIAQPARADLYNPRAGSISTANSLTLPIL 345          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.686e-13
Identity = 44/128 (34.38%), Postives = 58/128 (45.31%), Query Frame = 1
Query:   82 DRRAGNLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSP-------------QRDRXXXXXXXXXTPSYERDNGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            + R+ N+F GF   LL+EA  V+  +                VE  L +L P              R+R                NG +ET CT+++R NID P+ AD YNPRAGRVT +N  N PIL
Sbjct:  221 EERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTLRVRQNIDNPNRADTYNPRAGRVTNLNTQNFPIL 348          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 44/123 (35.77%), Postives = 57/123 (46.34%), Query Frame = 1
Query:   97 NLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSP------QRDRXXXXXXXXXTPSYERD-------NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            N+F GF   LL+EAF ++  +                VE  L +L P      Q               Y++        NG +ET CTM++R NID P+ AD YNPRAGRVT +N  N PIL
Sbjct:  226 NIFSGFSTELLSEAFGISNQVARQLQCQNDQRGEIVRVERGLSLLQPYASLQEQEQGQMQSREHYQEGGYQQSQYGSGCPNGLDETFCTMRVRQNIDNPNRADTYNPRAGRVTNLNSQNFPIL 348          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: LEGB6_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 1
Query:   97 NLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSPQRDRXXXXXXXXXTPSYERD-NGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            ++  GF    LA+ FN   D                 VE  LR+++P+  +             E+  NG EETIC++K+R NI +P+ AD+YNPRAG ++T N   LPIL
Sbjct:   80 SVLSGFSSEFLAQTFNTEEDTAKRLRSPRDKRNQIVRVEGGLRIINPEGQQEEEEEEEEEKQRSEQGRNGLEETICSLKIRENIAQPARADLYNPRAGSISTANSLTLPIL 190          
BLAST of CX046834 vs. ExPASy Swiss-Prot
Match: CRU3_BRANA (Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.905e-13
Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   97 NLFRGFDERLLAEAFNVNPDLXXXXXXXXXXXXXXXXVEEELRVLSP---QRDRXXXXXXXXXTPSYERDNGFEETICTMKLRHNIDKPSHADVYNPRAGRVTTVNRFNLPIL 426
            N+  GFD ++LA+A  ++  L                V+   +V+ P   Q             P   +DNG EETIC+M+   NID P+ ADVY P  GRVT+VN + LPIL
Sbjct:  249 NMLSGFDPQVLAQALKIDVRLAQELQNQQDSRGNIVRVKGPFQVVRPPLRQPYESEQWRHPRGPPQSPQDNGLEETICSMRTHENIDDPARADVYKPNLGRVTSVNSYTLPIL 361          
The following BLAST results are available for this feature:
BLAST of CX046834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
LEGA_GOSHI7.313e-1737.07Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2[more]
11SB_CUCMA9.551e-1737.1711S globulin subunit beta OS=Cucurbita maxima PE=1... [more]
11S3_HELAN4.436e-1433.3311S globulin seed storage protein G3 OS=Helianthus... [more]
LEGB7_VICFA9.883e-1434.75Legumin type B (Fragment) OS=Vicia faba GN=LEB7 PE... [more]
LEGB2_VICFA9.883e-1434.75Legumin type B (Fragment) OS=Vicia faba GN=LEB2 PE... [more]
LEGB4_VICFA1.686e-1334.75Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]
GLUA1_ORYSJ1.686e-1334.38Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
GLUA2_ORYSJ2.202e-1335.77Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
LEGB6_VICFA2.876e-1335.14Legumin type B (Fragment) OS=Vicia faba GN=LEB6 PE... [more]
CRU3_BRANA4.905e-1336.28Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10E04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10E04-J7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046834 ID=CX046834; Name=CX046834; organism=Citrus sinensis; type=EST; length=426bp
CTCGGTGGCAACCCACAACCACAACTCCAAGGTTTCAGTCAAAGTCAAGG
TGGCAGAAGTCAGGGAAGCCAAGGCAGCGACGACAGGAGAGCTGGCAATC
TCTTTAGAGGCTTTGACGAGCGGTTGTTGGCTGAGGCCTTCAACGTGAAC
CCAGATCTAATCAGGAGACTGCAGAGGCCACAGATACAGAGGGGCATTAT
CATCAGAGTCGAGGAAGAGCTGAGAGTACTGTCTCCTCAAAGAGACAGAG
AACAAGAACAGGAAGAATGCGAAGAAACTCCGTCATATGAAAGGGACAAT
GGCTTCGAGGAAACTATCTGTACAATGAAACTAAGGCACAACATCGATAA
ACCATCACATGCTGACGTCTACAACCCCCGGGCCGGACGTGTCACCACCG
TGAACAGATTCAACCTTCCTATCCTT
back to top