DN618440

Overview
NameDN618440
Unique NameDN618440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 4.977e-58
Identity = 103/117 (88.03%), Postives = 111/117 (94.87%), Query Frame = -1
Query:  236 NGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 586
            NGYHHRTEMNKKVYK+GK GQESH   TEFDRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSKFGHGRFQTT EKQ+++G++KA
Sbjct:  273 NGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 208.764 bits (530), Expect = 1.657e-53
Identity = 95/114 (83.33%), Postives = 108/114 (94.74%), Query Frame = -1
Query:  245 NGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGR 586
            NGYHHRTEMNKKVY++GK GQE+H+ +TE+DRTEKDITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  273 NGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 207.223 bits (526), Expect = 4.821e-53
Identity = 94/115 (81.74%), Postives = 107/115 (93.04%), Query Frame = -1
Query:  242 NGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRM 586
            NGYHHRTE+NKK+Y+LGK G E+HT +TE+DRTEKD+TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  273 NGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.966e-38
Identity = 74/128 (57.81%), Postives = 96/128 (75.00%), Query Frame = -1
Query:  209 GYHHRTEMNKKVYKLGKG---GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA*LYAKKSRV 583
            GYHHRTE+NKK+Y+LGK     +    G T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSKFGHGRFQT  EK+ + G++K  L A+   V
Sbjct:  273 GYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAESEAV 400          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = -1
Query:  239 GYHHRTEMNKKVYKLGKGGQES------HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 583
            GYHHRTE+NKK+Y++G G          +   TE+D T+K ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK GHGRFQT  +K  + G +K
Sbjct:  273 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.326e-37
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = -1
Query:  236 GYHHRTEMNKKVYKLGKG----GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 583
            GYHHR E NKK+Y++G+     G++  TG TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  274 GYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.840e-36
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  239 NGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 586
            NGYHHRT +N KVY++GKGG E +   TEFDRT+K ITPMGGF HYG V +D++M+KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  271 NGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.355e-36
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = -1
Query:  218 GYHHRTEMNKKVYKLGKGGQES------HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA*LYAKK 583
            GYHHRTE+NKK+Y++G+G          +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K  L  +K
Sbjct:  273 GYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKEK 400          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.134e-36
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  239 GYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 583
            G+HHRT +N K+Y++GK     +  + G TEFD T+K ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  273 GFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DN618440 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = -1
Query:  239 GYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 583
            GYH RT +N K+Y++GKG  E++ G T FDRT+K ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  271 GYHSRTSINHKIYRVGKGDDEAN-GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
The following BLAST results are available for this feature:
BLAST of DN618440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL3_ORYSJ4.977e-5888.0360S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH1.657e-5383.3360S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH4.821e-5381.7460S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_TOXCA1.966e-3857.8160S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_DROME2.568e-3860.3360S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_DICDI6.326e-3759.1760S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_ASHGO1.840e-3662.0760S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3L_BOVIN5.355e-3656.2560S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_CAEEL9.134e-3657.6360S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_YEAST4.533e-3559.1360S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618440 ID=DN618440; Name=DN618440; organism=Citrus sinensis; type=EST; length=586bp
TTTTCACGAATAGGAGCTCGAGGAATTTTTTTAAATTTAAAAATATTCAA
TAGAATAAAGCACGACCATCTCTTAAAAAATAAAAAGAACAAAGGAAAAA
GAAAAAGAAACATGGAAAGAAACACAGCTGATGCCAGGCTCAAAAACTGT
TCCAAGATAGTCAAACTGGATAAAATTTAGACTGGCTGAATTAACTATAA
CGGTGCAAAACTCTTGACTTTTTAGCATATAATTATGCTTTCATGCGTCC
ATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAAACT
TGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAACGA
GACGTCTGTTTGAGAAGCGACTGACGAAGAGTGACCACCCTCTTCTTAGG
TCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATACCAT
AGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCAAAT
TCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTAAAC
CTTCTTGTTCATTTCAGTACGATGATGGTATCCATT
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