CX046830

Overview
NameCX046830
Unique NameCX046830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y273_METTH (UPF0098 protein MTH_273 OS=Methanobacterium thermoautotrophicum GN=MTH_273 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.114e-25
Identity = 68/153 (44.44%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  124 NHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            N +GR+P +YT +G+    NISP L W  VP   KSLAL+ +D DAP        WTHWV+ NIPP   GL E       + G    G  +G ND    G+RGP  P+  HR+ F+LYALD  + L    +KE +LEA+EG+VLGEA L  ++
Sbjct:    9 NDRGRIPSRYTCDGE----NISPPLSWDGVPGEAKSLALICDDPDAPSKV-----WTHWVIFNIPPDSTGLEENVP----DAGRLPDGSVQGYNDSGTLGYRGPCPPSGVHRYFFRLYALDTVLDLEPGASKEDVLEAMEGHVLGEAKLIGLY 148          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y877_CHLPN (UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 OS=Chlamydia pneumoniae GN=CPn_0877 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  103 RLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            +L+SP   +   +P+KYT +G G    ISP L + +VP   +SLAL+VED D P        W HW+V N+  T+  L EG          E   ++  N   K P + GP  P+  HR+ F L+ALD  +     VT+++L EA+E +++ +A L   +
Sbjct:    2 QLLSPAFAYGAPIPKKYTCQGAG----ISPPLTFVDVPGAAQSLALIVEDPDVPKEIRSDGLWIHWIVYNLSTTITNLAEG---------AEIFAVQGLNTSGK-PVYEGPCPPDKQHRYFFTLFALDVVLPEEENVTRDQLYEAMEFHIIEQAELMGTY 147          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y109_CHLMU (UPF0098 protein TC_0109 OS=Chlamydia muridarum GN=TC_0109 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  103 RLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            +L S   ++   +P+KY+ +G G    ISP L + ++P   KSLAL+VED D P        W HW+V N+ P +  L EG          +   ++  N   ++ G+  P  P+  HR+ F  YALD  +     VTKE+LLEA+EG++L  A L   +
Sbjct:    2 QLTSQAFSYGRPIPKKYSCQGVG----ISPPLSFSDIPSEAKSLALIVEDPDVPANVREDGLWIHWIVYNLSPIVSNLAEG---------AQIFAVQGINTAGEI-GYCPPCPPDAKHRYYFYAYALDVVLPEEEGVTKEQLLEAMEGHILATAELMGTY 147          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y1250_AQUAE (UPF0098 protein aq_1250 OS=Aquifex aeolicus GN=aq_1250 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  139 LPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHG-HRFQFKLYALD-DEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            +P+ YT +G    K+ISP + W +VPEGTKS  L+++     DP  PI  +THWVV +IP   + L E F         E +GIK+G ND+   G+ GP  P  HG HR+ FK++AL  + + L    +++ +   + G +L +A +  ++
Sbjct:   32 IPKVYTCDG----KDISPHIGWEDVPEGTKSFVLIMD-----DPDAPIGTFTHWVVYDIPSQTRELLEDFPKVP-----EVSGIKQGINDFGRVGYGGPCPPRGHGYHRYFFKVFALSVESLGLPPGASRKDVELKMNGKILAQAHIIGLY 168          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y736_CHLTR (UPF0098 protein CT_736 OS=Chlamydia trachomatis GN=CT_736 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  103 RLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            +L S   ++   +P+KY+ +G G    ISP L + +VP   KSL L+VED D P        W HW+V N+ P +  L EG          +   ++  N   ++ G+  P  P+  HR+ F  YALD  +     VTKE+LLEA++G+++  A L   +
Sbjct:    2 QLTSQAFSYGRPIPKKYSCQGVG----ISPPLSFSDVPREAKSLVLIVEDPDVPPSVREDGLWIHWIVYNLSPVVSNLAEG---------AQIFAVQGLNTAGEI-GYCPPCPPDAKHRYYFYAYALDVVLSDEEGVTKEQLLEAMDGHIIATAELMGTY 147          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y1153_PYRAB (UPF0098 protein PYRAB11530 OS=Pyrococcus abyssi GN=PYRAB11530 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 1
Query:   94 EEFRLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPN-HG-HRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            EE   VS    +   +P KYT EG     +++P L    + E  KSL ++V+D DAP     +  +THW+  NIPP ++ +PEG   K+ E+      I +G ND+   G+ GP  P  HG H + FK+Y LD  ++L    T+E L +A+EG+++    L  ++
Sbjct:   31 EEMVKVSSVFGNDEFIPAKYTCEGI----DVNPPLRIEGISENAKSLVIIVDDPDAP-----LGTFTHWIAWNIPP-VEEIPEGIP-KQGEVEKPIHMI-QGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQFGELVGLY 183          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y1269_PYRHO (UPF0098 protein PH1269 OS=Pyrococcus horikoshii GN=PH1269 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 61/187 (32.62%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   31 MIPDQAAHNKFIAQASIAMASEEFRL-VSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPN-HG-HRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVLGEAVLTAIF 582
            +IP   A    +    I    E+  L VS    +   +P KYT EG     +I+P L+   + +  KSL ++V+D DAP     +  +THW+  NIPP  + +PEG   K+ E+  +   I +G ND+   G+ GP  P  HG H + FK+YALD  ++L    +++ L +A+EG+V+    L  ++
Sbjct:   21 LIPIVLATLVILGMGCIGGGEEKMSLKVSSVFGNNEFIPAKYTCEGV----DINPPLKIEGLSDNVKSLVIIVDDPDAP-----MGTFTHWIAWNIPPVTE-IPEGIP-KQGEVD-KPIHIIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYALDTTLNLKPGASRKELEKAMEGHVIQYGELVGLY 195          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: YBCL_ECOLI (UPF0098 protein ybcL OS=Escherichia coli (strain K12) GN=ybcL PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.361e-14
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   64 IAQASIAMASEEFRLVSPEINHQGRLPRKYTNEGQGAKK-NISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEY-AGIKEGNNDWKVPGWRG--PKLPNHGHRFQFKLYALDDE 492
            +A  + +  +  F++ S EI    +L   +   G G +  N SP L W  VPEGTKS A+ V D DAP  SG    W HW VVNIP T+  LP     ++   G +   G  +G ND+   G+ G  P   +  H +QFK++AL  E
Sbjct:   10 LAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG----WWHWTVVNIPATVTYLPVDAGRRD---GTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTE 149          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: YBHB_ECOLI (UPF0098 protein ybhB OS=Escherichia coli (strain K12) GN=ybhB PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.390e-14
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  103 RLVSPEINHQGRLPRKYTNEGQGAK-KNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHGHRFQFKLYALDDE 492
            +L+S ++    +LP ++   G G    NISP L W +VP GTKS  +   D DAP  SG    W HWVVVN+P   + LP+GF      +     G+ +   D+   G+ G   P    HR+ F ++ALD E
Sbjct:    2 KLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSG----WWHWVVVNLPADTRVLPQGFG---SGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIE 126          
BLAST of CX046830 vs. ExPASy Swiss-Prot
Match: Y1698_ARCFU (UPF0098 protein AF_1698 OS=Archaeoglobus fulgidus GN=AF_1698 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  109 VSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALDDEMHLGNKVTKERLLEAIEGNVL 555
            V     + G++P KYT +G+    +ISP L    + E  KSL ++ ED DAP     +  +THW+  N+ PT + +PE    K + +  +   + +G ND+   G+ GP  P+  HR+ F++YA+D    L    +++ LL AIEG++L
Sbjct:  141 VKSAFENGGKIPAKYTCDGE----DISPPLYIEGLREDVKSLVIICEDPDAP-----MGVFTHWIAWNVEPTSE-IPENVP-KTKFV--DEPKMVQGRNDFGKVGYNGPCPPSGEHRYYFRIYAID--TLLQGDYSRQELLRAIEGHIL 274          
The following BLAST results are available for this feature:
BLAST of CX046830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y273_METTH1.114e-2544.44UPF0098 protein MTH_273 OS=Methanobacterium thermo... [more]
Y877_CHLPN5.541e-1734.38UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 O... [more]
Y109_CHLMU3.591e-1634.38UPF0098 protein TC_0109 OS=Chlamydia muridarum GN=... [more]
Y1250_AQUAE1.045e-1535.76UPF0098 protein aq_1250 OS=Aquifex aeolicus GN=aq_... [more]
Y736_CHLTR1.365e-1533.13UPF0098 protein CT_736 OS=Chlamydia trachomatis GN... [more]
Y1153_PYRAB2.328e-1534.55UPF0098 protein PYRAB11530 OS=Pyrococcus abyssi GN... [more]
Y1269_PYRHO8.846e-1532.62UPF0098 protein PH1269 OS=Pyrococcus horikoshii GN... [more]
YBCL_ECOLI3.361e-1436.73UPF0098 protein ybcL OS=Escherichia coli (strain K... [more]
YBHB_ECOLI4.390e-1436.36UPF0098 protein ybhB OS=Escherichia coli (strain K... [more]
Y1698_ARCFU4.854e-1333.56UPF0098 protein AF_1698 OS=Archaeoglobus fulgidus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10E01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10E01-J1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046830 ID=CX046830; Name=CX046830; organism=Citrus sinensis; type=EST; length=780bp
ATTTTATCCAGCCGAAGAGCTATATGTAAGATGATACCAGATCAAGCAGC
TCATAATAAGTTTATAGCACAAGCAAGCATAGCAATGGCCAGCGAGGAGT
TCAGGCTAGTATCACCAGAAATAAACCACCAAGGGAGGCTGCCAAGAAAG
TACACAAACGAGGGGCAAGGTGCGAAGAAGAACATATCTCCCCGATTGGA
ATGGTACAATGTTCCGGAAGGAACGAAGAGCTTGGCTCTGGTGGTTGAAG
ACATAGATGCCCCGGACCCAAGTGGCCCAATCGTGCCGTGGACTCATTGG
GTGGTTGTTAACATACCTCCGACGCTGAAGGGTCTGCCGGAGGGATTCTC
CGGCAAAGAGGAGGAAATTGGCGGGGAATACGCCGGGATCAAAGAGGGAA
ACAATGATTGGAAGGTTCCGGGGTGGCGCGGGCCCAAGTTGCCCAACCAT
GGCCACAGGTTCCAGTTTAAGCTTTATGCCTTGGATGACGAGATGCACCT
TGGTAACAAGGTGACAAAGGAGCGGCTTTTGGAAGCAATTGAAGGAAATG
TCCTGGGAGAGGCAGTCTTGACTGCCATATTCTGAATATTTTAATGTTGG
TGTTTCTTAGCAGCTATGATGTGTGCTTTCTTGTAGCTCGCAGAGTATGT
GACATCAATGGACAACTAATGTAAAAATAAATTTATTTCTTAAAAAAAAT
GTAAACTAAATTTTACTTGACAGGCTTACCCTTTTTATACACAGGCTTAC
CCTTTTTATGCACTTTCTCTTTTTAAAAAA
back to top