DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.228e-54
Identity = 109/167 (65.27%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  157 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDN----------DHSDSELDQHEDYKPEDED--DFSNAGDT-KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI  N          D SD+E D+ E+Y  ED++  ++     T K FF+  DG SFHA++FMELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RPKR+
Sbjct:   70 QSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEEEEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRV 236          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.402e-40
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624
            D +  + E    E  + E+E D  S   D   FFA ++GASFHANSF+ELNLSRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERLL+RPKR+PA
Sbjct:  150 DGEEEEKEEGDEEAAEEEEETDKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPA 265          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_NEOFI (ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPAD---GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D E    E+ + E E D   A   K+FFAP +    AS    SF + NLSRP+LR   ++ ++ PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  256 HPDDEAASDEESEAESEVDAEEAEKRKAFFAPEEKSTAASTSNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 369          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_ASPFU (ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPAD---GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D E    E+ + E E D   A   K+FFAP +     S    SF + NLSRP+LR   ++ ++ PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  267 HPDDEAASDEESEAESEVDAEEAEKRKAFFAPEEKSTAVSTFNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 380          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  256 QQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDT----------KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            Q+  V + D+D + S+ D         +DD S+A D           K+FFAP +         A+SF  ++LSRP++R   ++G++KPTPIQA  IP+AL G+D+ G A TGSGKT AF LP LERLLYRPK+IP
Sbjct:  191 QESGVEVEDDDEAASDNDSVATPTNHPDDDASDASDDEEDAEEEAKRKAFFAPEEENNPDKKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIP 326          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDED--DFSNAGDTKSFFAPAD-----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            DND   + +   +D   ED+D  D       K FFA  +     G     +SF  ++LSRP+LR   ++G++KPTPIQA  IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct:  226 DNDSVATPVQHPDDEASEDDDEEDAEEEARRKEFFAAPEETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVP 346          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPAD----GASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D    +  D   + +DD   A   ++FFAP +    GA    N+ F  ++LSRP+LR    +G+++PTPIQ+  IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct:  223 HPDDAASEASDEDEDMDDDPEEAAKREAFFAPEEKPVKGAKQELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVP 338          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDED---DFSNAGDTKSFFAPADG----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            D+D   + ++  +D +  D++   D       K FFAP +          +SF E++LSRP+LR   ++G++KPTPIQA  IP++L G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct:  243 DDDSVATAVEHPDDVQSSDDEEGIDEEEEAKMKEFFAPEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVP 363          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  307 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            D  ++ + E ++D   A   K FFA AD      N    SF  ++LSRP+LR   ++G++KPTPIQ+  IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct:  218 DDDQESESEQDEDEEEAAKMKEFFA-ADEPKSDTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVP 325          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANS---FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D E+   ++   E E D   A   K+FFAP +  +    S   F + NLSRP+LR   ++ ++ PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  263 HPDDEVASDDESGAESEVDAEEAEKRKAFFAPEEKTTEEPTSKRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 376          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RH28_ARATH2.228e-5465.27DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
RH28_ORYSJ1.402e-4071.55DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
DRS1_NEOFI1.078e-2450.00ATP-dependent RNA helicase drs1 OS=Neosartorya fis... [more]
DRS1_ASPFU3.137e-2449.12ATP-dependent RNA helicase drs1 OS=Aspergillus fum... [more]
DRS1_GIBZE5.352e-2444.85ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DRS1_CHAGB1.192e-2347.11ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DRS1_BOTFB1.557e-2346.55ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
DRS1_NEUCR2.656e-2344.63ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DRS1_MAGGR2.656e-2349.54ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]
DRS1_ASPCL2.656e-2347.37ATP-dependent RNA helicase drs1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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