CX046822

Overview
NameCX046822
Unique NameCX046822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4112 contig Csv1_Contig4112:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.696e-38
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 2
Query:  287 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKKS 622
            VPLG+LFFISGLVVNL+QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+L+QRSGCLGS LAVMKKS
Sbjct:   10 VPLGILFFISGLVVNLLQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKS 121          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.892e-38
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 2
Query:  287 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKKS 622
            VPLGLLFFISGL VNL QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+L+QRSGCLGS LAVMKKS
Sbjct:    9 VPLGLLFFISGLAVNLFQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADNETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKS 120          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.778e-38
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 2
Query:  287 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKKS 622
            VPLG+LFFISGLVVNL+QAVC+V +RP+SKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+L+QRSGCLGS LAVMKKS
Sbjct:    9 VPLGILFFISGLVVNLLQAVCYVLVRPMSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKS 120          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.124e-37
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 2
Query:  287 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKKS 622
            +PLGLLF +SGL+VN IQAV FVTIRP SK+ YRRINR                 AGVK++L  D ETYR MGKEHAL++SNH+SDIDWL+GW+L+QRSGCLGSTLAVMKKS
Sbjct:   10 LPLGLLFLLSGLIVNAIQAVLFVTIRPFSKSFYRRINRFLAELLWLQLVWVVDWWAGVKVQLHADEETYRSMGKEHALIISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKS 121          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.425e-31
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  287 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +P+G+LF ISGL+VN+IQ V F+ +RP S++ YRRIN+                 A +KI L+VD ET  L+GKEHALV+SNH+SDIDWL+GWV++QR GCLGS+LA+MKK
Sbjct:   10 IPVGVLFLISGLIVNIIQLVFFIIVRPFSRSLYRRINKNVAELLWLQLIWLFDWWACIKINLYVDAETLELIGKEHALVLSNHRSDIDWLIGWVMAQRVGCLGSSLAIMKK 120          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: PLCC_PONAB (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Pongo abelii GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  293 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKK 124          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: PLCC_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Homo sapiens GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  293 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKK 124          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: PLCC_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Mus musculus GN=Agpat3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  293 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +G +F +SGL++N  Q +C + + P+SK+ YRRIN                  +  +  LF D+ T    GKEH +V+ NH  +ID+L GW + +R G LGS+  + K+
Sbjct:   17 IGFVFVVSGLIINFTQ-LCTLALWPISKHLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKR 124          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: PLCD_BOVIN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Bos taurus GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  302 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +F +SGL++N IQ +C + + P++K  +R+IN                  +G +  ++ D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK
Sbjct:   20 VFIVSGLIINTIQ-LCTLLLWPVNKQLFRKINCRLSYCVSSQLVMLLEWWSGTECVIYTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLAERFGVLGGSKVLAKK 124          
BLAST of CX046822 vs. ExPASy Swiss-Prot
Match: PLCD_RAT (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Rattus norvegicus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  302 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLSQRSGCLGSTLAVMKK 619
            +F  SGL+VN IQ +C + I P++K  +R+IN                  +G +  ++ D +     GKE+A+VV NHK +ID+L GW L++R G LG++  + KK
Sbjct:   20 VFIASGLIVNAIQ-LCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSGTECTIYTDPKASPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKK 124          
The following BLAST results are available for this feature:
BLAST of CX046822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LPAT2_BRAOL1.696e-3869.641-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_ARATH2.892e-3869.641-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA3.778e-3867.861-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE7.124e-3766.071-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH3.425e-3155.861-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
PLCC_PONAB1.307e-1435.781-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCC_HUMAN1.307e-1435.781-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCC_MOUSE1.446e-1334.861-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCD_BOVIN9.370e-1334.911-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_RAT2.726e-1235.851-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10D08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D08-H15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046822 ID=CX046822; Name=CX046822; organism=Citrus sinensis; type=EST; length=624bp
TCGAAATGGGAAAACTCGCCTTCAAAGCTCGAACACCGTCCTCTTCGTGA
CCTCCATCTCCCCAAATTTATTATAAATATCACAATAATAGCGATAATAA
ATTATCTCATCAATTGATTTTCAATTTCAGCATCTTATTTAAAATCTCAG
ATTTATTATTATCTCTTCTTGTTTTGTGAAGCGAACCCTCATTCTCTCTT
TACAAATCAGAATCACAACACAAAAAAGAAAAAAAGAAAGGAAAAGAATA
GCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCATCGTCCCATTGGGCCT
TCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTCATTCAGGCAGTTTGCT
TTGTGACTATTCGCCCTCTATCGAAGAACACGTACAGGAGAATCAATAGA
TGGGTAGCGGAATTGTTGTGGCTGGAACTTGTATGGATTGTTGATTGGTG
GGCTGGAGTTAAGATCAAACTTTTCGTAGACCGTGAAACGTATCGATTAA
TGGGTAAAGAACATGCACTTGTTGTTTCCAATCACAAAAGTGACATTGAC
TGGCTTGTTGGGTGGGTTTTGTCTCAGCGGTCAGGTTGTCTTGGAAGCAC
ATTGGCCGTTATGAAGAAATCATC
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