CX046820

Overview
NameCX046820
Unique NameCX046820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11481 contig Csv1_Contig11481:52..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046820 vs. ExPASy Swiss-Prot
Match: HIPL1_ARATH (HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.666e-33
Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = 2 
Query:  233 IIFLFANFXXXXXXXXXXXXCTDSRAPITLNITLSFCPYNGKTCCNATGDSQLQKQFQAMNISDSGCSSLLKSILCAKCDQFAGELFTAGSVVRPVPLLCNXXXXXXXXXXKATITDFCSEVWDTCQNVSVRNSPF 640
            ++FLF               C+DSRAP  +N TLSFCPY GKTCCN   D+ L KQFQAMNISD GC+S++KSILCA CD F+ +LF   S  + VP+LCN            +  +FCSE W+TCQNVS+  S F
Sbjct:    7 LVFLFLFLSCFALSSWALPLCSDSRAPSEVNSTLSFCPYKGKTCCNTMKDTSLMKQFQAMNISDKGCASVVKSILCANCDPFSSDLFRDNSDQQSVPILCNSTSSAN------STENFCSETWETCQNVSISGSLF 136
[Close]
BLAST of CX046820 vs. ExPASy Swiss-Prot
Match: HIPL2_ARATH (HIPL2 protein OS=Arabidopsis thaliana GN=HIPL2 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.166e-27
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 2 
Query:  293 CTDSRAPITLNITLSFCP-YNGKTCCNATGDSQLQKQFQAMNISDSGCSSLLKSILCAKCDQFAGELFTAGSVVRPVPLLCNXXXXXXXXXXKATITDFCSEVWDTCQNVSVRNSPF 640
            C+DS+ P+  N TL FC  Y  ++CCN+  D QLQ +F +MNISDS CSSLLKSILC+KCD+F+G+LF        VP+LCN           +T  D CS++WD+CQN+S+ +SPF
Sbjct:   28 CSDSKTPVNNNETLQFCDSYKERSCCNSKDDLQLQNRFNSMNISDSNCSSLLKSILCSKCDEFSGQLF-GDDDSSLVPILCN-----------STSQDLCSKLWDSCQNISIVSSPF 132
The following BLAST results are available for this feature:
BLAST of CX046820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HIPL1_ARATH8.666e-3350.00HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=... [more]
HIPL2_ARATH4.166e-2750.43HIPL2 protein OS=Arabidopsis thaliana GN=HIPL2 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10D07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D07-H13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046820 ID=CX046820; Name=CX046820; organism=Citrus sinensis; type=EST; length=642bp
TAATATTTTGAGGGGGAGCACTATTTAGGAGTTGGTACTGGGAAGAATGT
TTGAAAACCAACAAAACTTATGAATGTAAACCATAATCTTTTTGGTATTC
TTCAGCCAACCAAACGATTTTGCTTGCTTGTTAAGAGATGGGCCTGCAAT
AGATTGACAAAGTGAAGGGGTGTTATATCTGTAACGTCTGTTCATCTCTG
TCCATTTGGTGGAGATGGGAGGAGTTCTCGCCATCATCTTTCTTTTTGCC
AACTTTGTTATGCTTCTTGTTCCTTCACTTTCCCTTCCTCTATGCACTGA
TTCAAGGGCTCCAATTACTCTGAACATAACACTGAGTTTCTGTCCTTACA
ATGGGAAGACATGCTGCAACGCTACAGGAGATTCTCAATTGCAGAAGCAG
TTTCAAGCAATGAATATCTCTGATTCTGGCTGCTCTTCTCTTTTGAAATC
AATCCTTTGTGCTAAATGTGATCAGTTTGCAGGGGAGTTATTTACTGCTG
GTTCTGTAGTTCGGCCTGTTCCATTACTTTGCAACTCCACTGGTTCAAAT
TCATCTCAGTCCAGCAAAGCTACAATTACGGATTTCTGCTCTGAAGTATG
GGATACATGTCAGAATGTATCTGTCCGTAATTCCCCCTTCTC
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