DN618432

Overview
NameDN618432
Unique NameDN618432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_METEP (Flavoprotein wrbA OS=Methylobacterium extorquens (strain PA1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G MA+Q K F+D TGGLW    L GK    F            T  +  T L HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+E+EL+ A  QG+H+AGIA KL G
Sbjct:   81 GNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSEVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_METC4 (Flavoprotein wrbA OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G MA+Q K F+D TGGLW    L GK    F            T  +  T L HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+E+EL+ A  QG+H+AGIA KL G
Sbjct:   81 GNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSEVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_ENT38 (Flavoprotein wrbA OS=Enterobacter sp. (strain 638) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G M+ Q + FLD TGGLW T  L GK A +F               T  T L HHGM+ VPIGY     +F++  V+GG+PYGA T AG DGSRQP++ EL  A  QG+H+AG+AKKL G
Sbjct:   81 GNMSGQMRTFLDQTGGLWATGALYGKLASVFSSTGTGGGQEQTITSTWTT-LAHHGMVIVPIGYG-AQELFDVSAVRGGTPYGATTIAGGDGSRQPSQEELAIARFQGEHVAGLAKKLNG 198          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_METS4 (Flavoprotein wrbA OS=Methylobacterium sp. (strain 4-46) GN=wrbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.328e-22
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G MA+Q K FLD TGGLW    L GK   +F            T L+  T L+HHGM+ V + Y F  G   + +V G SPYGA T A GDGSRQP+ +EL+ A +QG+H+AGIA KL G
Sbjct:   81 GNMASQMKNFLDQTGGLWMKGALVGKVGSVFTSSASQHGGQESTILSFHTVLLHHGMVLVGLPYAF-QGQLGVSQVMGNSPYGASTIADGDGSRQPSPIELDGARYQGRHVAGIAAKLAG 199          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_METPB (Flavoprotein wrbA OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=wrbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G MA+Q K F+D TGGLW    L GK    F            T  +  T + HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+++EL+ A  QG+H+AGIA KL G
Sbjct:   81 GNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVMFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSQVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_SALTI (Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.633e-21
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G M+ Q + FLD TGGLW +  L GK  G+F               T  T L HHGM+ VPIGY+    +F++ +V+GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:   81 GNMSGQMRTFLDQTGGLWASGALYGKLGGVFSSTGTGGGQEQTITSTWTT-LAHHGMVIVPIGYS-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_DESMR (Flavoprotein wrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.633e-21
Identity = 55/119 (46.22%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  227 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLK 580
            G M  Q + FLDATG +W    L GKP G+F            T ++ I  L+HHGMI V + Y+F AG   +++V GGSPYGA T A GDGSR P+E EL+ A  QG+HIA + ++L+
Sbjct:   85 GNMCGQMRQFLDATGQIWMRGGLVGKPGGVFCSTATQHGGQETTLMSFIQTLLHHGMIVVGLPYSF-AGQMRLDEVTGGSPYGATTIAGGDGSRMPSENELDAARFQGRHIADVTRRLR 202          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_SHISS (Flavoprotein wrbA OS=Shigella sonnei (strain Ss046) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:   84 GNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTT-LAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 201          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_SHIFL (Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:   81 GNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTT-LAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of DN618432 vs. ExPASy Swiss-Prot
Match: WRBA_SHIF8 (Flavoprotein wrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  224 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 580
            G M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:   81 GNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTT-LAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
The following BLAST results are available for this feature:
BLAST of DN618432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
WRBA_METEP3.290e-2250.00Flavoprotein wrbA OS=Methylobacterium extorquens (... [more]
WRBA_METC43.290e-2250.00Flavoprotein wrbA OS=Methylobacterium chloromethan... [more]
WRBA_ENT383.290e-2249.17Flavoprotein wrbA OS=Enterobacter sp. (strain 638)... [more]
WRBA_METS47.328e-2248.33Flavoprotein wrbA OS=Methylobacterium sp. (strain ... [more]
WRBA_METPB1.250e-2148.33Flavoprotein wrbA OS=Methylobacterium populi (stra... [more]
WRBA_SALTI1.633e-2146.67Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3... [more]
WRBA_DESMR1.633e-2146.22Flavoprotein wrbA OS=Desulfovibrio magneticus (str... [more]
WRBA_SHISS3.637e-2146.67Flavoprotein wrbA OS=Shigella sonnei (strain Ss046... [more]
WRBA_SHIFL3.637e-2146.67Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=... [more]
WRBA_SHIF83.637e-2146.67Flavoprotein wrbA OS=Shigella flexneri serotype 5b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618432 ID=DN618432; Name=DN618432; organism=Citrus sinensis; type=EST; length=582bp
TTTCCCAATTTAATGTATAGAAGAAGTACAAATAATCAACCAAGCAACTT
TTTATCATGAAGAAAAGCCACTATATGACACACGCACAAAGCTTATACTG
ATAACAAAGCAAGAATTTATTGTTTGCAAACCAGAAGATATAGGAAACCG
GGAATTCTAGAGACGAAAAGAATGGAATAAGTCCACCTAATGGTTGTATT
GTAAATTGAAATATTTAAGCACTTCCCTTCAGCTTCTTTGCAATGCCCGC
AATGTGTTTTCCCTGGTGGAAAGCTTGCTCCAACTCAAGCTCAGTTGGCT
GTCTCGAGCCATCTCCAGCAAAAGTTCCTGCACCGTAGGGACTTCCACCT
TTCACTTTCTCCATCTCAAACATGCCAGCACCAAATGTGTATCCAATAGG
AACAAATATCATCCCATGGTGAACAAGCTGAGTAATTGCCGTCAACGCTG
TAGTCTCTTGTCCACCACCTTGTGACCCAGTGCTGTAGAACATCCCAGCA
GGTTTGCCAGCGAGCTGTTGTGTCCTCCATAGACCACCAGTAGCATCTAA
AAATGCTTTAAATTGAGCAGCCATCATTCCAA
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